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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcaaatctgtttctcttactgagactgttctagttgcatgagtgtgttctgctttgtctcttcgcttacgtgctttattcagcttcttaagaatgtctttgtctggcagGGGGAATAACTACATTGGTTGACATGCCCTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G04955.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053395|gb|DR349152.1|DR349152
EST:     TGGAAGAAGTGAATGGGAAGGTTTTCCTTCTGGAACTAAGGCTGCTGCTGCTG                       
genomic: TGGAAGAAGTGAATGGGAAGGTTTTCCTTCTGGAACTAAGGCTGCTGCTGCTGgtaatcaaat ... tgtctggc
EST: gi|116378121|gb|EG420713.1|EG420713
EST:     TGGAAGAAGTGAATGGGAAGGTTTTCCTTCTGGAACTAAGGCTGCTGCTGCTG                       
genomic: TGGAAGAAGTGAATGGGAAGGTTTTCCTTCTGGAACTAAGGCTGCTGCTGCTGgtaatcaaat ... tgtctggc
EST: gi|116378124|gb|EG420716.1|EG420716
EST:     TTCTGGAACTAAGGCTGCTGCTGCTG                       
genomic: TTCTGGAACTAAGGCTGCTGCTGCTGgtaatcaaat ... tgtctggc
EST: gi|125198198|gb|EL213152.1|EL213152
EST:     TTTCCTTCTGGAACTAAGGCTGCTGCTGCTG                       
genomic: TTTCCTTCTGGAACTAAGGCTGCTGCTGCTGgtaatcaaat ... tgtctggc


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctcttcgcttacgtgctttattcagcttcttaagaatgtctttgtctggcagGGGGAATAACTACATTGGTTGACATGCCCTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAG
        cgcttac  putative branch site (score: 3)
                                         tctttgtct  putative PPT
                   tttattca  TA-rich tract