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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgatttgatttctcgaaaccgttttctctgtaatctgattcgccggcgaatatggcggctctgttttactgattccgttgtttttggttgttgcagGGGAATAATAAGTGTAGTCTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTG

Basic information

species Arabidopsis thaliana
transcript AT4G04955.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053395|gb|DR349152.1|DR349152
EST:     TCATCGTTGCTCTTTTCTCCTTCTTCTTCGCTTCTCCTCGCTCTTTACAG                         GGGAATAATAAGTGTAGTCTTCTTCCTCATGATCATTACTGGATCTCAAGT
genomic: TCATCGTTGCTCTTTTCTCCTTCTTCTTCGCTTCTCCTCGCTCTTTACAGgtttttgatt ... gttgttgcagGGGAATAATAAGTGTAGTCTTCTTCCTCATGATCATTACTGGATCTCAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccggcgaatatggcggctctgttttactgattccgttgtttttggttgttgcagGGGAATAATAAGTGTAGTCTTCTTCCTCATGATCATTACTGGATCTCAAGTAAACGCATCGTCACACCTAATGGTCTCATCTCTGGTTCTG
                         tactgat  putative branch site (score: 2)
                                    ttgttttt  TA-rich tract