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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATGCTGAGCTCTGATCATTCACCTACAAAGCCTGAACTCAAACTTATGAGTGATGGCAACTTCTTGAAAGCTTGGGGTGGGATATCTTCTTTACAGgttcgtttagtcttaaaaatgtaatatgtagaaactgtgagagcacaaaaaaactcatggaagagccaattgcag

Basic information

species Arabidopsis thaliana
transcript AT4G04955.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04955.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: GLYMA13G31430.8 (Glycine max), 5'ss of exon 12
TGATATGCTGAGCTCTGATCATTCACCTACAAAGCCTGAACTCAAACTTATGAGTGATGGCAACTTCTTGAAAGCTTGGGGTGGGATATCTTCTTTACAGgttcgtttagtcttaaaaatgtaatatgtagaaactgtgagagcacaaaaa----aactcatggaagagccaattgcag-----------------------
|||  |  | ||  ||||||||||||| ||   |||||||||||| ||||||   || ||  ||||||| ||||||||||| || ||||| ||||| |||||| ||  | | || |    || |  |  |  |  | |   |   ||| ||    |||  ||   | |  |||||| |                        
TGACCTATTAAGTACTGATCATTCACCAACTGTGCCTGAACTCAAGCTTATGGAGGAGGGTGACTTCTTAAAAGCTTGGGGGGGCATATCATCTTTGCAGgttagtg-atttttcatgcagtgaagttaaacacttttcttactgcaataatataaacctatttgaaa-tcaattgtaaatctacaagtttatcattgaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116378124|gb|EG420716.1|EG420716
EST:     TGAGTGATGGCAACTTCTTGAAAGCTTGGGGTGGGATATCTTCTTTACAG                         TTTGTTCTTCCTATAACATGGTCTTATGGAAAAAAGTATGGAGTAA
genomic: TGAGTGATGGCAACTTCTTGAAAGCTTGGGGTGGGATATCTTCTTTACAGgttcgtttag ... ccaattgcagTTTGTTCTTCCTATCACATGGTCTTATGGAAAAAAGTATGGAGTAA
EST: gi|124815462|gb|EH900328.1|EH900328
EST:     TGATGGCAACTTCTTGAAAGCTTGGGGTGGGTATTATCTTCTTTACAG                         TTTGTTCTTCCTATCACATGGTCTTATGGAAAAAAGTATGGAGTAACGCTC
genomic: TGATGGCAACTTCTTGAAAGCTTGGGGTGGG-A-TATCTTCTTTACAGgttcgtttag ... ccaattgcagTTTGTTCTTCCTATCACATGGTCTTATGGAAAAAAGTATGGAGTAACGCTC
EST: gi|86086368|gb|DR382127.1|DR382127
EST:     GATATCTTCTTTACAG                         TTTGTTCTTCCTATCACATGGTCTTMTGGAAMAAAGTATGGAGTAACGCTC
genomic: GATATCTTCTTTACAGgttcgtttag ... ccaattgcagTTTGTTCTTCCTATCACATGGTCTTATGGAAAAAAGTATGGAGTAACGCTC