1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaaagccatccactttagttttccagttggtaagctcgacactattcttacagctttttgcctttacagATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG
species | Arabidopsis thaliana |
transcript | AT4G04955.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAG ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGEST: gi|116378124|gb|EG420716.1|EG420716
genomic: CCTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAGgtaaagccat ... gcctttacagATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG
EST: CCTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAG ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGEST: gi|124994657|gb|EL066926.1|EL066926
genomic: CCTTAAACAGTTTCCCTTCAACTGTATCTCCTGAAACTTTGAAACTCAAGgtaaagccat ... gcctttacagATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG
EST: CTGAAACTTTGAAACTCAAG ATTGAAGCTTGCGAAAAACAGAATACATGTTGATGTTG
genomic: CTGAAACTTTGAAACTCAAGgtaaagccat ... gcctttacagATTGAAGC-TGCGAAAAACAGAATACATGTTGATGTTG
ttagttttccagttggtaagctcgacactattcttacagctttttgcctttacagATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG
ttcttac putative branch site (score: 2)
ctttttgcctttac putative PPT
tattctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagccatccactttagttttccagttggtaagctcgacactattcttacagctttttgcctttacagATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC