1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttttgtttcttgagtcttatgatccttctctcatgattcaatagttattacaaaaacctcattggcccttgtctcgctgatactgtttgtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAGAGATCGAGAGAGACTTAGAGATTGAAGATGGTAGTGAAAATGATCCTC
species | Arabidopsis thaliana |
transcript | AT4G04955.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGACAAACATCACTCATATAAAG GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAEST: gi|116378121|gb|EG420713.1|EG420713
genomic: TGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
EST: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAG GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAEST: gi|116378124|gb|EG420716.1|EG420716
genomic: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
EST: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAG GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAEST: gi|116378122|gb|EG420714.1|EG420714
genomic: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
EST: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAG GAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
genomic: GCCCTTCAGGAATCAACGATTTTCCAATGACAAACATCACTCATATAAAGgttttgtttc ... gtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCA
gttattacaaaaacctcattggcccttgtctcgctgatactgtttgtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAGAGATCGAGAGAGACTTAGAGATTGAAGATGGTAGTGAAAATGATCCTC
cgctgat putative branch site (score: 4)
tttgttt putative PPT
tttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtttcttgagtcttatgatccttctctcatgattcaatagttattacaaaaacctcattggcccttgtctcgctgatactgtttgtttatgcagGAAGGACTATCTGTATTAGCTAAATACAAACGACCATTGCTTGTACACGCAGAGATCGAGAGAGACTTAGAGATTGAAGATGGTAGTGAAAATGATCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG