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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGTTACTGAAAACACAAGAATTGGTGGTTCTGCAGAAGGAGCTCATCTTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaagagttcaagcagtagaagcactagaatttggttgtatctcattacatattttttttgtctttggatggagtaaag

Basic information

species Arabidopsis thaliana
transcript AT4G04955.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04955.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G07910.3 (Glycine max), 5'ss of exon 10
ATCGGTTACTGAAAACACAAGAATTGGTGGTTCTGCAGAAGGAGCTCATCTTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaagagttcaagcag--tagaagcactagaatttggttgtatctcatt-acatattttttttgtctttggatggagtaaag-----
|   |||||  |  |||||||||  |||||| ||  ||||||||||||| |||| ||||| || || |||||| | ||| ||||||||||| |||| ||||| ||       |  ||  |  | | |  | |  ||| |||   |  |  ||| | ||   |  |    || |  ||  | ||  |     
AGGTGTTACGAAGGACACAAGAAAAGGTGGTCCTTTAGAAGGAGCTCATGTTCACATTGTTCACTTGTCTGATTCAAGTGCTTCCTTGGATCTGATTAAGgtgttttgtgcattgagttgcctggtaaaaattaaatatggaattcaccaattgatatgagtgctaatgctataaattta-tactgttcag

upper sequence: AT4G04955.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G07920.2 (Glycine max), 5'ss of exon 10
ATCGGTTACTGAAAACACAAGAATTGGTGGTTCTGCAGAAGGAGCTCATCTTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaagagttcaagcagtagaagcactagaatttggt-tgtatctcattacatattttttttgtctttgg-atggagtaaag--------
|   |||||  |  |||||||||  |||||| ||  ||||||||| ||| |||| ||||| || || |||||| | ||| ||||||||||| |||| ||||||||   | || ||   ||| |      || ||||   | || |  |||  |  |  | |   ||    ||  ||  | | |          
AGGTGTTACGAAGGACACAAGAAAAGGTGGTCCTTTAGAAGGAGCACATGTTCACATTGTCCACTTGTCTGATTCAAGTGCTTCCTTGGATCTGATTAAGgtatt---gtgtgcattgagttgccttgttaaaattaaatatggaattcaccaattgatatgagtgctaatgctataaatttatactgttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124914958|gb|EH988832.1|EH988832
EST:     TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAG                         GAAGCAAAAGGC
genomic: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGC
EST: gi|124821478|gb|EH906344.1|EH906344
EST:     TTCCTTGGATTTGATAAAG                         GAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
genomic: TTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
EST: gi|116378124|gb|EG420716.1|EG420716
EST:     TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAG                         GAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
genomic: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
EST: gi|116378122|gb|EG420714.1|EG420714
EST:     TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAG                         GAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC
genomic: TTCATATTGTACATTTATCTGATGCCAGTTCTTCCTTGGATTTGATAAAGgtattcaaga ... tggagtaaagGAAGCAAAAGGCAAAGGAGACAGTGTTACTGTTGAAACATGTCCACATTAC