1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGgtaaacactttttgctatcaaaccttaccacatctgttgattcaagacaacacatggtgtgccctaaatctttgtttccatttttctccag
species | Arabidopsis thaliana |
transcript | AT4G04955.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG GGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTCTTGEST: gi|116378124|gb|EG420716.1|EG420716
genomic: ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGgtaaacactt ... ttttctccagGGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTCTTG
EST: ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG GGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTCTTGEST: gi|116378122|gb|EG420714.1|EG420714
genomic: ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGgtaaacactt ... ttttctccagGGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTCTTG
EST: AAACTCAAGATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG GGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTCTTGEST: gi|125067582|gb|EL134037.1|EL134037
genomic: AAACTCAAGATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGgtaaacactt ... ttttctccagGGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTCTTG
EST: ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTG GGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCTEST: gi|124994657|gb|EL066926.1|EL066926
genomic: ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGgtaaacactt ... ttttctccagGGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTGCT
EST: ATTGAAGCTTGCGAAAAACAGAATACATGTTGATGTTG GGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTG
genomic: ATTGAAGC-TGCGAAAAACAGAATACATGTTGATGTTGgtaaacactt ... ttttctccagGGTTCTGGGGAGGTCTGGTACCTGACAATGCACTCAACTCAAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAAGCTGCGAAAAACAGAATACATGTTGATGTTGgtaaacactttttgctatcaaaccttaccacatctgttgattcaagacaacacatggtgtgccctaaatctttgtttccatttttctccag
TTGAAG
- TGAAGC
- - AAGCTG
- - AGCTGC