1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gcaaggccttttgtgcttaacaactgctcacatttatttcttcgcatttcaactcttgttttctggcattcttatgtattttggtgttgtcttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAAGTGCAGTGGCAACAGTGGGAGCTCTCCTATTGGTGGCTTTAATGTGTTT
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAAGATGCACTTCAATCACCATCAAATGGTCTGCAGTCACCTTCACCAG ATGACATGATTAATAAAAGGAATGGGAAGAATTCAACCAGACTTGTTATAAEST: gi|31360868|gb|CD445225.1|CD445225
genomic: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCAGgtactaactg ... cttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAA
EST: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCAG ATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAAEST: gi|32825445|gb|CD965167.1|CD965167
genomic: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCAGgtactaactg ... cttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAA
EST: CAAAGATGCACTTCAATCACCATCAAATGGTCTGCAGTCACCTTCACCAG ATGACATGATTAEST: gi|31356479|gb|CD440836.1|CD440836
genomic: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCAGgtactaactg ... cttacaacagATGACATGATTA
EST: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCTC ATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAAEST: gi|31349376|gb|CD433733.1|CD433733
genomic: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCAGgtactaactg ... cttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAA
EST: CAAAGATGCACTTCAATCACCATCAAATGGTCTGCAGTCACCTTCACCAG ATGACATGATTAATAAAAGGAATGGGAAGAATTCAACCAGACTTGTTATAA
genomic: CAAAGATGCACTTCAATCATCATCAAATGGTCTGCAGTCACCTTCACCAGgtactaactg ... cttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAA
atttcaactcttgttttctggcattcttatgtattttggtgttgtcttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAAGTGCAGTGGCAACAGTGGGAGCTCTCCTATTGGTGGCTTTAATGTGTTT
gtcttac putative branch site (score: 99)
ttgtctt CT-rich tract
attcttatgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaaggccttttgtgcttaacaactgctcacatttatttcttcgcatttcaactcttgttttctggcattcttatgtattttggtgttgtcttacaacagATGACATGATTAATAAAAGGAATGGGAAGAATTCGACCAGACTTGTTATAAGTGCAGTGGCAACAGTGGGAGCTCTCCTATTGGTGGCTTTAATGTGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - -tgtgctt
- - - - - - - - - - caactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgttg