1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGCTATTTGGTCAATCTCCGTGGTTATTGCAACTCCCCTTCATCAAAACTTTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtcattttttatcaactcacatctcctcgattgcgtttatctttcatctttagttgttttttaaataacacgttaacaagcttgttaccagtcc...
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAGEST: gi|31360868|gb|CD445225.1|CD445225
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAGEST: gi|32934260|gb|CF039072.1|CF039072
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAGEST: gi|60351591|gb|DN218564.1|DN218564
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGTCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAGEST: gi|37395990|gb|CF635282.1|CF635282
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
EST: TTGATATATGA-TATTCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAGEST: gi|61119688|gb|DN560649.1|DN560649
genomic: TTGATATATGATTA-TCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAGEST: gi|31356479|gb|CD440836.1|CD440836
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
EST: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATG AAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
genomic: TTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtca ... atctatgcagAAAAATCTGAACAGTTGGATTGGGATGCACGTATTAACATTATACTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTATTTGGTCAATCTCCGTGGTTATTGCAACTCCCCTTCATCAAAACTTTTGATATATGATTATCTTCAAGGTGGAAGCCTGGATGAAGTGCTTCATGgtaagtgtcattttttatcaactcacatctcctcgattgcgtttatctttcatctttagttgttttttaaataacacgttaacaagcttgttaccagtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaca