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gtaagttttataatggctagagtgcactgttcagggcaacaattctagataaagtaacaaatgatccctgaatagcactgaaccatatcagttcaattgcacgcttcttatgtataacagactttactgtgtatagtatggcttttgttctgatgtgtgatgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGATCTGGTGGAACTCGAGGCATT
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATT GTATCTACAAGGAAATTATTTAAGTGGATACATCCCTTCAGAATTTGGCGAEST: gi|211487045|gb|FL021472.1|FL021472
genomic: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGA
EST: TATGGNTCACTCCCTCCTGAACTGGGGGATTGTACCAAGCTGCCACAATT GTATCTACAAG-AAATTATTTTAGTGGGATACATCCCEST: gi|149109166|gb|EE190051.2|EE190051
genomic: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGG-ATACATCCC
EST: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATT GTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGAEST: gi|149087972|gb|EE177200.2|EE177200
genomic: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGA
EST: ATGGTTCACTCCCCTC-TGAACTGGGGAATTGTACCAAGCTGCAACAATT GTATCTACAAGGAAACTATTTAAGTGGATACATCCCCTCAGAATTTGGCGAEST: gi|149087580|gb|EE176978.2|EE176978
genomic: ATGGTTCACTCCC-TCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGA
EST: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATT GTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAAATTTG-CGEST: gi|31354140|gb|CD438497.1|CD438497
genomic: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAA-TTTGGCG
EST: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATT GTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGAEST: gi|31349376|gb|CD433733.1|CD433733
genomic: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGA
EST: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATT GTATCTACAAGGAAATTATTTAAGTGGATACATCCCTTCAGAATTTGGCGA
genomic: TATGGTTCACTCCCTCCTGAACTGGGGAATTGTACCAAGCTGCAACAATTgtaagtttta ... tgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGA
aacagactttactgtgtatagtatggcttttgttctgatgtgtgatgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGATCTGGTGGAACTCGAGGCATT
ttctgat putative branch site (score: 110)
tatagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttataatggctagagtgcactgttcagggcaacaattctagataaagtaacaaatgatccctgaatagcactgaaccatatcagttcaattgcacgcttcttatgtataacagactttactgtgtatagtatggcttttgttctgatgtgtgatgacttgcagGTATCTACAAGGAAACTATTTAAGTGGATACATCCCTTCAGAATTTGGCGATCTGGTGGAACTCGAGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA