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gtatgtgatgattatggctgctatttgtggcacattttttcagcttgtccaaaatgctaacacttattggtgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTTTCTAAATTGGCGTGAGCAAGATGCAGACCCCTGCAATTGGAAGGGTGT
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATAATTCTTCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|211487045|gb|FL021472.1|FL021472
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTTCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|149109166|gb|EE190051.2|EE190051
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|148951631|gb|EC897373.2|EC897373
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|211489922|gb|FL021481.1|FL021481
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATEST: gi|31360094|gb|CD444451.1|CD444451
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAAT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|149087972|gb|EE177200.2|EE177200
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|149087580|gb|EE176978.2|EE176978
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTEST: gi|31354140|gb|CD438497.1|CD438497
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
EST: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATG GTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
genomic: GATAATTCTCCACCTTGTTGCTCATGAGGCAAGAACGCTGAGTTCAGATGgtatgtgatg ... tgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCT
tgtggcacattttttcagcttgtccaaaatgctaacacttattggtgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTTTCTAAATTGGCGTGAGCAAGATGCAGACCCCTGCAATTGGAAGGGTGT
tgctaac putative branch site (score: 84)
acatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgatgattatggctgctatttgtggcacattttttcagcttgtccaaaatgctaacacttattggtgttctacagGTGAAGCACTTCTTGCCTTCAAGAAGGCAGTTACAAATTCAGATGGAGTCTTTCTAAATTGGCGTGAGCAAGATGCAGACCCCTGCAATTGGAAGGGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG