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gtatgtggaagtccctctgttacatcctgaggggaaagagaagaaatgaacttctgtttactctttaatcgccgcttcagactttctctggttgctaaaatatcattgttaatgctctgagctaacaccaacgaaatccgaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGGGGTTTTGGTACTCGAAATACTCAGTGGAAAGCGGCCTACTGATGCATC
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|32934260|gb|CF039072.1|CF039072
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATACTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|211113783|gb|FL295736.1|FL295736
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|211113784|gb|FL295737.1|FL295737
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAG-CACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|24767488|gb|CA402630.1|CA402630
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTCCCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|24763969|gb|CA399139.1|CA399139
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|60342589|gb|DN209562.1|DN209562
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTATCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|37395990|gb|CF635282.1|CF635282
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|60396674|gb|DN229542.1|DN229542
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|61119688|gb|DN560649.1|DN560649
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|60348288|gb|DN215261.1|DN215261
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGEST: gi|149109165|gb|EE293168.2|EE293168
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
EST: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAG AGTATATGCAATTTGGCAGAGCCCCCGAGAAGACTGATGTCTACAGTTTTG
genomic: ATCACATATTACTACAATAGTTGCAGGAACATTTGGCTACCTTGCACCAGgtatgtggaa ... gaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTG
ctaaaatatcattgttaatgctctgagctaacaccaacgaaatccgaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGGGGTTTTGGTACTCGAAATACTCAGTGGAAAGCGGCCTACTGATGCATC
agctaac putative branch site (score: 105)
atatcattgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggaagtccctctgttacatcctgaggggaaagagaagaaatgaacttctgtttactctttaatcgccgcttcagactttctctggttgctaaaatatcattgttaatgctctgagctaacaccaacgaaatccgaatccacagAGTATATGCAATTTGGCAGAGCCACCGAGAAGACTGATGTCTACAGTTTTGGGGTTTTGGTACTCGAAATACTCAGTGGAAAGCGGCCTACTGATGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA