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gtaaccgtggcatgtaatatgttgtgcaagtatttattatttttcaaaggaaattgtcttatgacattgctagatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACATCCTCAAGAAGCTAGAGACTATAGATGAAGAAAATATCATTGGAGCAGG
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTGGNNNNNNNGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAG GCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACAEST: gi|31360868|gb|CD445225.1|CD445225
genomic: AAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtgg ... gatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
EST: AAATTTTGGNNNNNNNGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAG GCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACAEST: gi|60351591|gb|DN218564.1|DN218564
genomic: AAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtgg ... gatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
EST: AAATTTTGGNNNNNNNGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAG GCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACAEST: gi|61119688|gb|DN560649.1|DN560649
genomic: AAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtgg ... gatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
EST: AAATTTTGGNNNNNNNGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAG GCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACAEST: gi|31356479|gb|CD440836.1|CD440836
genomic: AAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtgg ... gatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
EST: AAATTTTGGNNNNNNNGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAG GCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACTEST: gi|31349376|gb|CD433733.1|CD433733
genomic: AAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtgg ... gatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
EST: AAATTTTGGNNNNNNNGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAG GCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
genomic: AAATTTTGGAAAAAAAGATATGCGTGGTTTCAGAGTGGAGCTCTGTGGAGgtaaccgtgg ... gatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACA
aagtatttattatttttcaaaggaaattgtcttatgacattgctagatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACATCCTCAAGAAGCTAGAGACTATAGATGAAGAAAATATCATTGGAGCAGG
tttttc CT-rich tract
tttattatttttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccgtggcatgtaatatgttgtgcaagtatttattatttttcaaaggaaattgtcttatgacattgctagatttttcagGCTCTTCTGTCGTGATGTTCCATGGGGACCTCCCTTACTCCTCAAAAGACATCCTCAAGAAGCTAGAGACTATAGATGAAGAAAATATCATTGGAGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG