1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTCAGATGGAGTCTTTCTAAATTGGCGTGAGCAAGATGCAGACCCCTGCAATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaaagaaccattctttaagctaacttggtttgttgttacttgcttaatattgtatctagctatctacagttttgcaacactaacaatttttatgggatagaatttctctaatactagagaatgaaatttcagtatcttctagcaatgtagcataaatatctgacttactcctttattcag
species | Zea mays |
transcript | GRMZM5G886952_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|211489917|gb|FL021476.1|FL021476
genomic: AGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGTAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|211487045|gb|FL021472.1|FL021472
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGTAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|149109166|gb|EE190051.2|EE190051
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|148951631|gb|EC897373.2|EC897373
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|31360094|gb|CD444451.1|CD444451
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|149087972|gb|EE177200.2|EE177200
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|149087580|gb|EE176978.2|EE176978
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|31354140|gb|CD438497.1|CD438497
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAAEST: gi|31349376|gb|CD433733.1|CD433733
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
EST: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCT GATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
genomic: AATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaa ... ctttattcagGATTCTTGCATACCACAGATTAGTTGGGCCCATACCACCCGAAATTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCAGATGGAGTCTTTCTAAATTGGCGTGAGCAAGATGCAGACCCCTGCAATTGGAAGGGTGTTAGATGTGATAGTCATAGCAAGAGAGTGATTGATCTgtaagaacaaagaaccattctttaagctaacttggtttgttgttacttgcttaatattgtatctagctatctacagttttgcaacactaacaatttttatgggatagaatttctctaatactagagaatgaaatttcagtatcttctagcaatgtagcataaatatctgacttactcctttattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA