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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatcagtatattatttacagatataaaagccttagcatcactatttcactaagctcgaagtcctaaaaccttgtactgttttgtaagtggcaata...

Basic information

species Zea mays
transcript GRMZM2G141399_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g09230.2 (Oryza sativa), 5'ss of exon 8
TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatcagtatattatttacagatataaaagccttag--catcact---atttcactaagctcgaagtcctaaaaccttgtactgttttgtaagtggcaata
| ||  | | ||| || ||||||| ||||||| | ||||| |||||||||  ||||||||| |||| ||| | |||||||||| |||||||||||||||||||||   ||    ||| || ||| | | | |    ||||   || |||    |||||| ||   |    |||  || |||| ||||   |  |     |     
TGCATGTACGTCAAAGCTTTTCTTTGGGTGGTACAGAAATTAAAGTGTGGTTTGGACTAGTTGAAGACCTGTCTGTTTACTTCTTGGAACCTCAAAATGGgtatgttgcatctcattcttcacacaaacatagctattagtctattactcttgtttcacgaaaaccatcatccctaatccttatactagctaatgcacag-----

upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA13G27480.1 (Glycine max), 5'ss of exon 9
TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatcagtatattatttacagatataaaagccttagca--tcactatttcactaagctcgaag-tcctaaaaccttgtactgttttgtaagtggcaata
|  ||   ||  | || | ||| ||||| ||  ||||||||||||| |||| ||||  ||| |||||||| | ||| |||||  |||| ||||||||||||||         ||  |    || | | |  ||   ||  ||  | | | ||||  || ||  ||   || | | |  ||| |    |   |   |   |   
TTGACTATCACAAAAGCTATTCCTGGGGAGGCACTGAAATAAAAGTATGGCATGGAAAAGTTGAAGGCCTCTCTGTCTACTTTTTGGAGCCTCAAAATGGgtaaatgctttgattctccacactgttctctaatttttgtcaattaagtgtttc-ttatgcctgagcctctttatattttggaaaaataactttttcatat--

upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA15G11500.1 (Glycine max), 5'ss of exon 9
TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatcagtatattatttacagatataaaagccttagcatcactatttcactaagctcgaagtcctaaaaccttgtactgttttgtaagtggcaata
|  ||   ||  | || | ||| ||||| ||  ||||||||||||| |||| ||||  ||| |||||||| | ||| |||||  |||| ||||||||||||||   |     ||  |    || | | |  ||   ||  |       | |  || |  ||  || |       |   |    | | |    |  |||| 
TTGACTATCACAAAAGCTATTCCTGGGGAGGGACTGAAATAAAAGTATGGCATGGAAAAGTTGAAGGCCTCTCTGTCTACTTTTTGGAGCCTCAAAATGGgtaaatactttgattctccacactgttctctaatgtttgtctattaagtgtttcttatgtctgagcctctttttcacatcaactctggaccctatcaatt

upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA07G39040.1 (Glycine max), 5'ss of exon 6
TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatc-agtatattatttacagatataaaagccttagcatcactatttcactaagctcgaagtcctaaaaccttgtactgttttgtaagtggcaata---
| ||    ||    |  | || |||||||||  ||||||||||||| |||| ||||   || ||||| || | ||| |||||| ||||||||||||||| ||| | ||   |     ||| |  | |  |         | |||| |    | ||| || |  |    |  | |      |  |  |  ||| | |  ||    
TTCAATATCACAGAAACTATTTTTGGGGTGGGACTGAAATAAAAGTATGGCATGGAAAGGTGGAAGGTCTCTCTGTCTACTTCTTGGAACCTCAAAATGCgtaagaatttggcgctctatctttaaaagttgttagga-aacatcccctcataactcaggtttactctcacagaa---agaaagcctaataaatagagatgagt

upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 8
lower sequence: AT1G11720.1 (Arabidopsis thaliana), 5'ss of exon 7
TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatca-gtatattatttac--agatataaaagccttagcatcactatttcactaag-ctcgaagtcctaaaaccttgtactgttttgtaagtggcaata
| ||  |  |    || | |   ||||| ||  ||||||||||||| |||| ||||  ||| ||||||||||  ||||||||| | || || ||||||||||  || | | | |||||  |     || | |     | ||    |||  || ||   | | |  ||||    ||    ||||  |   |||   || |||   
TGCAATTTAACAGAAGCTATCACTGGGGAGGAACTGAAATAAAAGTTTGGCATGGAAAAGTAGAAGGCCTTTCGGTTTACTTCTTAGATCCACAAAATGGgttagctttatgcatattgctctttaagctctttccacatttcattcatcatctcttgagggcatgaag----aagttgttgtcgttgcttgactgttgcag--

upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv10s0116g01730.t01 (Vitis vinifera), 5'ss of exon 11
TACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatcagtatattatttacagatataaaagccttagcatcactatttcactaagctcgaagtcctaaaaccttgtactgttttgtaagtggcaata----
| ||     |     | | ||  ||||||||  ||||||||||||| |||  ||||  ||| |||||||||| |||||||||  | || ||||||||||||||  |  |||||  |   |||||  | | | |  | |  ||| | |||||   || |         || |    |  |  |  |   ||  |  || |     
TTCAGTATAAGAGATGCTATTTCTGGGGTGGAACTGAAATAAAAGTTTGGTTTGGAAAAGTGGAAGGCCTTTCTGTTTACTTTTTAGAGCCTCAAAATGGgtaatc--cagtagttctgttacaccttttaga--catgccattattattttggtaggaatttgtatctcatttttactgttcatgcatatatttcagttaact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33091960|gb|CF051954.1|CF051954
EST:     CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGG                         GATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
genomic: CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatca ... ttttttttagGATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
EST: gi|31361027|gb|CD445384.1|CD445384
EST:     CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGG                         GATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
genomic: CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatca ... ttttttttagGATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
EST: gi|31357767|gb|CD442124.1|CD442124
EST:     CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGG                         GATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
genomic: CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatca ... ttttttttagGATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
EST: gi|67022688|gb|CO451437.1|CO451437
EST:     CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGG                         GATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
genomic: CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatca ... ttttttttagGATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
EST: gi|32933471|gb|CF038283.1|CF038283
EST:     CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGG                         GATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG
genomic: CGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAACCTCAAAATGGgtatgcatca ... ttttttttagGATGTTTGGAGTCGGATATGTATATGGCAGGGACGATGACCGCCGATTTGG