Sequence
atgc intronic sequence ATGC exonic sequenceTGGACAATGACAAGGAACGAGCCCGAGATCGAGGCCTTGAGCCCAACGGGTTTAGCTTTGACGGAGCTGATAGCAACGGTGTTGACTACGCGCTGAACAGgcaagcacagtctctcacacagagctagctagactgcccgcttcactactgaacgtaccctagcctgcaactcttactcgtcgtgctgttctttcccgtgttctattttcccttttatttttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G141399_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g09230.2 (Oryza sativa), 5'ss of exon 15
TGGACAATGACAAGGAACGAGCCCGAGATCGAGGCCTTGAGCCCAACGGGTTTAGCTTTGACGGAGCTGATAGCAACGGTGTTGACTACGCGCTGAACAGgcaagcacagtctctcacacagagctagctagactgcccgcttcactactgaacgtaccctagc----ctgcaactcttactcgtcgtgctgttctttcccgtgttctattttcccttttatttttccag
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TAGACCATGACAAAGACCGGGCTCGAGTTCTAGGCCTTGAACCAAATGGGTTCAGCTTTGATGGAGCTGACTGTAATGGTGTGGATTACGCCCTGAACAGgcaagtac--ctccacacctcacaattgtgtgaatgcacaattga--gctgaacataatcgtacagaaccccgagccaaattcatcatgtga--catccgtgtggt------------------------
upper sequence: GRMZM2G141399_T01 (Zea mays), 5'ss of exon 15
lower sequence: LOC_Os08g09230.1 (Oryza sativa), 5'ss of exon 15
TGGACAATGACAAGGAACGAGCCCGAGATCGAGGCCTTGAGCCCAACGGGTTTAGCTTTGACGGAGCTGATAGCAACGGTGTTGACTACGCGCTGAACAGgcaagcacagtctctcacacagagctagctagactgcccgcttcactactgaacgtaccctagc----ctgcaactcttactcgtcgtgctgttctttcccgtgttctattttcccttttatttttccag
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----CCATGACAAAGACCGGGCTCGAGTTCTAGGCCTTGAACCAAATGGGTTCAGCTTTGATGGAGCTGACTGTAATGGTGTGGATTACGCCCTGAACAGGCAAgtac--ctccacacctcacaattgtgtgaatgcacaattga--gctgaacataatcgtacagaaccccgagccaaattcatcatgtga--catccgtgtggtttgt--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31354651|gb|CD439008.1|CD439008EST: TTTAGCTTTGACGGAGCTGATAGCAACGGTGTTGACTACGCGCTGAACAG GGCGATCTCAGCTTGGTTCGATGCCCGGAGCTGGTTCCACTCCCTTTGCAA
genomic: TTTAGCTTTGACGGAGCTGATAGCAACGGTGTTGACTACGCGCTGAACAGgcaagcacag ... atttttccagGGCGATCTCAGCTTGGTTCGATGCCCGGAGCTGGTTCCACTCCCTTTGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGACAATGACAAGGAACGAGCCCGAGATCGAGGCCTTGAGCCCAACGGGTTTAGCTTTGACGGAGCTGATAGCAACGGTGTTGACTACGCGCTGAACAGgcaagcacagtctctcacacagagctagctagactgcccgcttcactactgaacgtaccctagcctgcaactcttactcgtcgtgctgttctttcccgtgttctattttcccttttatttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT