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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATGTCCCCGTCGTAGGAATCGTCACTCGCCTGACAGCCCAAAAGGGGATCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAGgtcattcgatcccttgcattgcatggcacatatatagaacttggaacattctttctttccttaattattcgtgcctttctgtcatcttgaaatgaaactaattaagaatgccatatgtttggtttccag

Basic information

species Zea mays
transcript GRMZM2G141399_T02
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141399_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os08g09230.1 (Oryza sativa), 5'ss of exon 12
CGATGTCCCCGTCGTAGGAATCGTCACTCGCCTGACAGCCCAAAAGGGGATCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAGgtcattcgatcccttgca-ttgcatggcacatatatagaacttggaacattctttctttccttaattattcgtgcctttctgtcatcttgaaatgaaactaattaagaatgccatatgtttggtttccag
 ||||||||| | || |||||| ||||||| ||||||||||| ||||| |||||||| || || |||||  |||| || ||||| ||||| || |||||||| | ||  |   |  || |    | |    |   |||||||||      | || | || |  |||||||  ||||   || ||    |||||  |              |  || |||||| |||  ||
TGATGTCCCCATTGTTGGAATCATCACTCGTCTGACAGCCCAGAAGGGTATCCACCTCATTAAACATGCACTTCATCGGACACTTGAACGCAATGGACAGgttaatcatttgatgacaatcttctagtgtctccctagaacttg-----cttttccctttcgcaattatttttgccgacctatc----tgaaacaa--------------gtgatgtgtttgctttttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32833105|gb|CD972783.1|CD972783
EST:     ACACTCGAACGGAACGGACAG                         GTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC
genomic: ACACTCGAACGGAACGGACAGgtcattcgat ... tggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC
EST: gi|31361027|gb|CD445384.1|CD445384
EST:     TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAG                         GTGGGTTTGCTTGGTTCAGCGCCGGAC
genomic: TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAGgtcattcgat ... tggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGAC
EST: gi|24769423|gb|CA404552.1|CA404552
EST:     TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAG                         GTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC
genomic: TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAGgtcattcgat ... tggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC