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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagcacttctctctataagatataccacctcctcgaaattttattgacagatattgtaggaattcttttagttgacttttgcttccttttgattgagcagGCTGAGAGAAATGCAAAAATGAAAGCTGAGATGAAGGAAAAGACTATGAGAATGTTCCTGGTTTCTCAGAAACACATTGTTTACACCGAACCACTTGAAA

Basic information

species Zea mays
transcript GRMZM2G141399_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141399_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os08g09230.2 (Oryza sativa), 3'ss of exon 4
gagcactt-ctctctataagatataccacctcctcgaaattttattgacagatat-tgtag-gaattcttttagttgacttttgcttcctttt-gattgagcagGCTGAGAGAAATGCAAAAATGAAAGCTGAGATGAAGGAAAAGACTATGAGAATGTTCCTGGTTTCTCAGAAACACATTGTTTACACCGAACCACTTGAAA
  | | ||  || || | |  ||||     || |     ||| |    ||||||| ||| | ||| || ||  | | ||| || |  | |||| | |||  |||| ||||| ||  |||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| || |||||||||||||
-tgtagttgttcactgtcatgtatata---tcttgatgttttgaacatcagatatatgttgtgaagtccttcggcttactattcccacttttttgcttgtacagGTTGAGAAAAGAGCAAAAATGAAATCTGAGATGAAGGAAAAGACTATGAGAATGTTTCTACTTTCTCAGAAACACATTGTTTATACTGAACCACTTGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacagatattgtaggaattcttttagttgacttttgcttccttttgattgagcagGCTGAGAGAAATGCAAAAATGAAAGCTGAGATGAAGGAAAAGACTATGAGAATGTTCCTGGTTTCTCAGAAACACATTGTTTACACCGAACCACTTGAAA
                              cttttgcttccttttg  CT-rich tract
               aattctttta  TA-rich tract