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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactgagtaatctgataagaaagatgtaagaagacagttattgggtacatgataaattttatctctctcatcaattaatatgcatctgttacaatgcagGTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAAC

Basic information

species Zea mays
transcript GRMZM2G141399_T02
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33091960|gb|CF051954.1|CF051954
EST:     GTACGGTTGCTTGAATCTAAGCAAT                         GTCAAGAATCTACAAATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
genomic: GTACGGTTGCTTGAATCTAAGCAATgtaagttaaa ... tacaatgcagGTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
EST: gi|31361027|gb|CD445384.1|CD445384
EST:     GGTTGCTTGAATCTAAGCAAT                         GTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
genomic: GGTTGCTTGAATCTAAGCAATgtaagttaaa ... tacaatgcagGTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
EST: gi|31357767|gb|CD442124.1|CD442124
EST:     GGTTATTCTTCCAAAGTACGGTTGCTTGAATCTAAGCAAT                         GTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
genomic: GGTTATTCTTCCAAAGTACGGTTGCTTGAATCTAAGCAATgtaagttaaa ... tacaatgcagGTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
EST: gi|67022688|gb|CO451437.1|CO451437
EST:     ACAATGTGGAGGTTATTCTTCCAAAGTACGGTTGCTTGAATCTAAGCAAT                         GTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA
genomic: ACAATGTGGAGGTTATTCTTCCAAAGTACGGTTGCTTGAATCTAAGCAATgtaagttaaa ... tacaatgcagGTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacatgataaattttatctctctcatcaattaatatgcatctgttacaatgcagGTCAAGAATCTACACATCCATCAGAGTTTTTCTTGGGGTGGTTCTGAAATAAAAGTGTGGCGTGGACTAGTCGAAGGCCTTTGTGTTTACTTCCTGGAAC
                            aattaat  putative branch site (score: 3)
     tgataaattttatct  TA-rich tract