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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTCATGGTGCCATCGTTCCTCATCTTGGGAAATTCTATGGCATTCTGAATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacactttattattcgtatgcatttttcttctattggtttacatttattccaaaagcttttccccttccctttctctctctttctctttttggtaacat...

Basic information

species Zea mays
transcript GRMZM2G141399_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141399_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g09230.1 (Oryza sativa), 5'ss of exon 11
AGGTCATGGTGCCATCGTTCCTCATCTTGGGAAATTCTATGGCATTCTGAATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacactt-tattattcgtatgcatttttct---tctattggtttacatttattccaaaagcttttccccttccctttctctctctttctctttttggtaacat
||||||||||||||| | |||||||| ||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || | ||| ||||| ||||||||| | |  |  || ||| || ||||||| |    |||   ||  | || ||||     | |||       |         | |  ||   ||     | |   
AGGTCATGGTGCCATAGCTCCTCATCGTGGAAAATTCTATGGAATTCTCAATGGAATTGATCCAGATATCTGGGATCCATATACTGATAACTTCATCCCGgtatagtcatgatagtcgaatacatttttatacaactaccagtccatatgtattt---gatcttggtaaactaaaacaaagtttgcttgggttgccaattatg-

upper sequence: GRMZM2G141399_T01 (Zea mays), 5'ss of exon 11
lower sequence: GLYMA07G39040.1 (Glycine max), 5'ss of exon 9
AGGTCATGGTGCCATCGTTCCTCATCTTGGGAAATTCTATGGCATTCTGAATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacacttta-ttattcgtatgcatttttcttctattggtttacatttattccaaaagcttttccccttccctttctctctctttctctttttggtaacat--
 ||  ||  ||| || | ||||||||||   || ||  | || ||| | |||||||||||||||||||||||||| || |  || ||  | || || || |||     || ||| | | ||   |   || |||||   |||| |  |||    || |  |       ||   |  | | |  ||    | ||| ||||||  
TGGGAATCCTGCAATTGCTCCTCATCTTCACAAGTTTCAGGGTATTATTAATGGAATTGATCCAGATATATGGGACCCATTTAACGATGAGTTCATTCCTgtaagtagtaattacttg-atatttcggtcatctatgtctttagaaatatat--aatgtatcatttactcatatcttatatgatttgaatattgttaacatac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361027|gb|CD445384.1|CD445384
EST:     ATGGAATTGATCCGGATATATGGGATCCGTACAATGACAACTTTATCCCG                         GTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
genomic: ATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacacttta ... tgagtttcagGTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
EST: gi|31357767|gb|CD442124.1|CD442124
EST:     ATGGAATTGATCCGGATATATGGGATCCGTACAATGACAACTTTATCCCG                         GTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
genomic: ATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacacttta ... tgagtttcagGTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
EST: gi|67022688|gb|CO451437.1|CO451437
EST:     GGGATTGATCCAGATATATGGGATCCCCGTACA-TGACA-CTTTATCCCN                         GTCCACTACACTTGTGAGAATGTGGNTTGAA
genomic: GGAATTGATCCAGATATATGGGATCC--GTACAATGACAACTTTATCCCGgtacacttta ... tgagtttcagGTCCACTACACTTGTGAGAATGTGG-TTGAA
EST: gi|37419287|gb|CF647322.1|CF647322
EST:     ATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCG                         GTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
genomic: ATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacacttta ... tgagtttcagGTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
EST: gi|24769423|gb|CA404552.1|CA404552
EST:     ATGGAATTGATCCGGATATATGGGATCCGTACAATGACAACTTTATCCCG                         GTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG
genomic: ATGGAATTGATCCAGATATATGGGATCCGTACAATGACAACTTTATCCCGgtacacttta ... tgagtttcagGTCCACTACACTTGTGAGAATGTGGTTGAAGGCAAGAGGGCTGCTAAGAGG