Sequence
atgc intronic sequence ATGC exonic sequenceAAATGGGTTAGACTATCATATTCCTGTTTTTGGGTCAATTGCAAAGGAACCACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcatatttctgagttaaattcatattattagcgcaagatcgagtggcaactcacatcaccgtttctcgtttattgttccataacactagtattctgtctgaccaatgctatcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os08g09230.2 (Oryza sativa), 5'ss of exon 6
AAATGGGTTAGACTATCATATTCCTGTTTTTGGGTCAATTGCAAAGGAACCACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcatatttctgagttaaattca-tattattagcg-caagatcgagtggcaactcacatca--ccgtttctcgtttattgttccataa--cactagtattctgtctgaccaatgctatcacag
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GAATGGGACAGACTATCATATTCCTGTTTCTGGTTCCAATGCAAAGGAGCCTCCCATTCATATTGTCCATATAGCGGTTGAGATGGCACCCATTGCAAAGgtaagccatattaccatgtaaaattttctgtggctagcaacagtgctagacatcaacacttgccaagttatctgttatttctatgtgcataaagtaatgccatactctgtaatc--tccaattacag
upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA07G39040.1 (Glycine max), 5'ss of exon 4
AAATGGGTTAGACTATCATATTCCTGTTTTTGGGTCAATTGCAAAGGAACCACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcatatttctgagttaaattcatattattagcgcaagatcgagtggcaactcacatcaccgtttctcgtttattgttccataacactagtattctgtctgaccaatgctatcacag
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CAATAGAATGGATTATCACATACCTATTTTGGGTGGTATTGTAAAGGAAACGCCCATGCATATTGTCCATATTGCTGTTGAGATGGCCCCAATTGCAAAGgtaaatta-------gcattgcatctatatcat---ctcaacttcaactacaagtctgtgtaaacttttattgtttgagcatggaaaatttttggaattta--caattaatg---------
upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA13G27480.1 (Glycine max), 5'ss of exon 7
AAATGGGTTAGACTATCATATTCCTGTTTTTGGGTCAATTGCAAAGGAACCACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcatatttctgagttaaattcatattattagcgcaagatcgagtggcaactcacatcaccgtttctcgtttattgttccataacactagtattctgtctgaccaatgctatcacag
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ATTTGGAATGGATTATCACATACCAGTTTTTGGAAGTATTGCAAAGGAACCACCTTTGCATATCATCCATATTGCTGTGGAGATGGCCCCAATTGCAAAAgtgagctaacctattgcatgtatcttatctta---------aattcattgacatgcctc-tgagcagacttcttttattgcc----aaggctggcaaattgttgga--aattagaa-----
upper sequence: GRMZM2G141399_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT1G11720.1 (Arabidopsis thaliana), 5'ss of exon 5
AAATGGGTTAGACTATCATATTCCTGTTTTTGGGTCAATTGCAAAGGAACCACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcatatttctgagttaaattcatattattagcgcaagatcgagtggcaactcacatcaccgtttctcgtttattgttccataacactagtattctgtctgaccaatgctatcacag
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AAATGGTCTGGATTACCATTTACCAGTCGTGGGAGGTATTTCAAAGGAACCACCATTGCACATTGTTCATATTGCTGTTGAAATGGCACCCATCGCAAAGgtaaccgtaagatgtgaggttggcctttaaaagcattgtataaatatatcctaagtttttgtat-atctattacatgcag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67022688|gb|CO451437.1|CO451437EST: CACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAG GTTGGAGGTCTTGGTGATGTTGTCACTAGTCTTTCACGTGCTGTGCAAGAT
genomic: CACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcata ... gctatcacagGTTGGAGGTCTTGGTGATGTTGTCACTAGTCTTTCACGTGCTGTGCAAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAATGGGTTAGACTATCATATTCCTGTTTTTGGGTCAATTGCAAAGGAACCACCTATGCACATTGTCCACATCGCTGTTGAGATGGCACCAATCGCAAAGgttattcatatttctgagttaaattcatattattagcgcaagatcgagtggcaactcacatcaccgtttctcgtttattgttccataacactagtattctgtctgaccaatgctatcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG