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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcattcgatcccttgcattgcatggcacatatatagaacttggaacattctttctttccttaattattcgtgcctttctgtcatcttgaaatgaaactaattaagaatgccatatgtttggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTCAACCTGGCGAATAAGCTCCACGGCGTAAACCATGGGCAAGTGAGGCTTT

Basic information

species Zea mays
transcript GRMZM2G141399_T02
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32833105|gb|CD972783.1|CD972783
EST:     ACACTCGAACGGAACGGACAG                         GTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC
genomic: ACACTCGAACGGAACGGACAGgtcattcgat ... tggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC
EST: gi|31361027|gb|CD445384.1|CD445384
EST:     TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAG                         GTGGGTTTGCTTGGTTCAGCGCCGGAC
genomic: TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAGgtcattcgat ... tggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGAC
EST: gi|24769423|gb|CA404552.1|CA404552
EST:     TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAG                         GTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC
genomic: TCCACCTGATCAAGCATGCGATTCACCGTACACTCGAACGGAACGGACAGgtcattcgat ... tggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttctgtcatcttgaaatgaaactaattaagaatgccatatgtttggtttccagGTGGTTTTGCTTGGTTCAGCGCCGGACTCTCGAATCCAAGCTGATTTTGTCAACCTGGCGAATAAGCTCCACGGCGTAAACCATGGGCAAGTGAGGCTTT
                     aactaat  putative branch site (score: 2)
                                                tttcc  putative PPT
               aaatgaaactaattaa  TA-rich tract