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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGAATGGCGAGTCTGCGGTAGATTGCAATTCGCTTTCCTCAATGCCAAATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatatgctacatctgtctagatatcctacttgcatatctgatcttgcgtaatatgtactctttgatctttgttgtgctttaatgcatgaattgcactgttttcatggcatgtgtctaccgactatttgtttttgtaatgtgttcatccaaatttaattctggtgtggttgttacag

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37843620|gb|BJ601628.1|BJ601628
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67727802|gb|BJ978061.1|BJ978061
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37835295|gb|BJ593307.1|BJ593307
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67723608|gb|BJ973867.1|BJ973867
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162227600|gb|FC402307.1|FC402307
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|18335450|gb|BJ167470.1|BJ167470
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162224101|gb|FC400667.1|FC400667
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37832305|gb|BJ590317.1|BJ590317
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|18340253|gb|BJ172281.1|BJ172281
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162227601|gb|FC402308.1|FC402308
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37836344|gb|BJ594352.1|BJ594352
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162231956|gb|FC409030.1|FC409030
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|208372255|gb|DC948058.1|DC948058
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162188197|gb|FC363963.1|FC363963
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37840285|gb|BJ598293.1|BJ598293
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37849880|gb|BJ607888.1|BJ607888
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162174832|gb|FC351624.1|FC351624
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37852310|gb|BJ610318.1|BJ610318
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162187793|gb|FC364172.1|FC364172
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37831671|gb|BJ589683.1|BJ589683
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37835840|gb|BJ593852.1|BJ593852
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37825506|gb|BJ583572.1|BJ583572
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|18336621|gb|BJ168644.1|BJ168644
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67724396|gb|BJ974655.1|BJ974655
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162192779|gb|FC370137.1|FC370137
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37847368|gb|BJ605376.1|BJ605376
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|208362837|gb|DC950637.1|DC950637
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|208369244|gb|DC944561.1|DC944561
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67721362|gb|BJ971621.1|BJ971621
EST:     ACAAANCCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162157638|gb|FC332960.1|FC332960
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162185056|gb|FC362502.1|FC362502
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162152328|gb|FC328515.1|FC328515
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162274215|gb|FC449975.1|FC449975
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37848300|gb|BJ606308.1|BJ606308
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162164607|gb|FC341902.1|FC341902
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162162646|gb|FC338948.1|FC338948
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|18335970|gb|BJ167991.1|BJ167991
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67693000|gb|BJ953233.1|BJ953233
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37839012|gb|BJ597020.1|BJ597020
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162153927|gb|FC329434.1|FC329434
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162254758|gb|FC431047.1|FC431047
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37828489|gb|BJ586501.1|BJ586501
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162272188|gb|FC448697.1|FC448697
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37825584|gb|BJ583650.1|BJ583650
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67691646|gb|BJ951879.1|BJ951879
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162182308|gb|FC357179.1|FC357179
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162262897|gb|FC439290.1|FC439290
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37843368|gb|BJ601376.1|BJ601376
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|18338297|gb|BJ170321.1|BJ170321
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37837367|gb|BJ595375.1|BJ595375
EST:     TTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: TTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37850428|gb|BJ608436.1|BJ608436
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|18340265|gb|BJ172293.1|BJ172293
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37851349|gb|BJ609357.1|BJ609357
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162170887|gb|FC346578.1|FC346578
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|67726749|gb|BJ977008.1|BJ977008
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162166828|gb|FC343005.1|FC343005
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37847348|gb|BJ605356.1|BJ605356
EST:     ATGTGGCNTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|208395260|gb|DC916069.1|DC916069
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162187792|gb|FC364171.1|FC364171
EST:     CACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: CACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|208375136|gb|DC944861.1|DC944861
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162164608|gb|FC341903.1|FC341903
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37848531|gb|BJ606539.1|BJ606539
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37849743|gb|BJ607751.1|BJ607751
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|162166829|gb|FC343006.1|FC343006
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
EST: gi|37834360|gb|BJ592372.1|BJ592372
EST:     ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAG                         TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC
genomic: ATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatat ... gttgttacagTACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCGAATGGCGAGTCTGCGGTAGATTGCAATTCGCTTTCCTCAATGCCAAATGTGGCCTTCACTATTTCTAACAAAACCTTCGAGCTTAAACCAGAGGAGgttagtatatgctacatctgtctagatatcctacttgcatatctgatcttgcgtaatatgtactctttgatctttgttgtgctttaatgcatgaattgcactgttttcatggcatgtgtctaccgactatttgtttttgtaatgtgttcatccaaatttaattctggtgtggttgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG