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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcagcttaccctttagttcaatttcgcacaattagcgtcatgtttttgttgtgtagcatttaaacgtcatcgagtattttattatgtgttctaggacttttatgtagctctttaaatgcatgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394252|gb|DC933920.1|DC933920
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|208356135|gb|DC902213.1|DC902213
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18354369|gb|BJ186425.1|BJ186425
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGGTCTATGGAAGGTTTCTTG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGG-TCTATGGAAGGTTTCTTG
EST: gi|67709535|gb|BJ965351.1|BJ965351
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAAGGTTTCTTG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAA-GGTTTCTTG
EST: gi|18373100|gb|BJ204702.1|BJ204702
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTA
EST: gi|100443113|gb|BY981739.1|BY981739
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100401523|gb|BY954573.1|BY954573
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18327738|gb|BJ159741.1|BJ159741
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162248590|gb|FC425366.1|FC425366
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100365835|gb|BY967170.1|BY967170
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GGACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGGAAGTTTTCTTG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGG-AAGGTTTCTTG
EST: gi|18367970|gb|BJ200054.1|BJ200054
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATG
EST: gi|100359537|gb|BY947032.1|BY947032
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGATTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18328390|gb|BJ160395.1|BJ160395
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATG
EST: gi|100409102|gb|BY991858.1|BY991858
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100442060|gb|BY962953.1|BY962953
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18372793|gb|BJ204395.1|BJ204395
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTT
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTT
EST: gi|18352921|gb|BJ184976.1|BJ184976
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAA
EST: gi|100408544|gb|BY974184.1|BY974184
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162157639|gb|FC332961.1|FC332961
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162153928|gb|FC329435.1|FC329435
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100358471|gb|BY983922.1|BY983922
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18368640|gb|BJ200725.1|BJ200725
EST:     TTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTT
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTT
EST: gi|18345072|gb|BJ177113.1|BJ177113
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGGTCTATGGAAGGTTTCTTG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGG-TCTATGGAAGGTTTCTTG
EST: gi|162231957|gb|FC409031.1|FC409031
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18366942|gb|BJ199022.1|BJ199022
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100367681|gb|BY984765.1|BY984765
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18355060|gb|BJ187119.1|BJ187119
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|208391424|gb|DC937572.1|DC937572
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100416581|gb|BY975456.1|BY975456
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|67569734|gb|BJ942558.1|BJ942558
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|67719530|gb|BJ969789.1|BJ969789
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18347698|gb|BJ179745.1|BJ179745
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100367922|gb|BY948157.1|BY948157
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|67712683|gb|BJ966132.1|BJ966132
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|67718260|gb|BJ968519.1|BJ968519
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162274216|gb|FC449976.1|FC449976
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18369130|gb|BJ201215.1|BJ201215
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTA
EST: gi|162185057|gb|FC362503.1|FC362503
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100358422|gb|BY983897.1|BY983897
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162188198|gb|FC363964.1|FC363964
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|208361291|gb|DC930330.1|DC930330
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100414647|gb|BY956795.1|BY956795
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18372855|gb|BJ204457.1|BJ204457
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATG
EST: gi|18366961|gb|BJ199041.1|BJ199041
EST:     TTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGG
genomic: TTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGG-AAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGG
EST: gi|162182309|gb|FC357180.1|FC357180
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100388408|gb|BY952010.1|BY952010
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162266083|gb|FC442768.1|FC442768
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162277812|gb|FC454275.1|FC454275
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18329815|gb|BJ161821.1|BJ161821
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTA
EST: gi|100446136|gb|CJ970435.1|CJ970435
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100387632|gb|BY951632.1|BY951632
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|18356978|gb|BJ189037.1|BJ189037
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGGTCTATGGAAGGTTTCTTG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGG-TCTATGGAAGGTTTCTTG
EST: gi|67508427|gb|BJ941294.1|BJ941294
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100446181|gb|CJ970480.1|CJ970480
EST:     CTTTCATCATAGGTACAAATCTGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|208356996|gb|DC930026.1|DC930026
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162255640|gb|FC431638.1|FC431638
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162174833|gb|FC351625.1|FC351625
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100443032|gb|BY981658.1|BY981658
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACCAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGGAAG-TTTCTTG
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGG-AAGGTTTCTTG
EST: gi|162262898|gb|FC439291.1|FC439291
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100414112|gb|BY975086.1|BY975086
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GGACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162192060|gb|FC367273.1|FC367273
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|162192780|gb|FC370138.1|FC370138
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
EST: gi|100410404|gb|BY992089.1|BY992089
EST:     CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG                         GAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA
genomic: CTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seq library.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 119

CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATGgtacgcagct ... tgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG































 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttattatgtgttctaggacttttatgtagctctttaaatgcatgtgttgtagGAACGTCGTTTGCTATCCAATACGGCACTGGGTCTATGGAAGGTTTCTTGAGTCAAGACGATGTCACACTTGGTGATCTCACGGTGAAAGGCCAG
                      ttttatgta  TA-rich tract