Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattcttcgtcccggtttcatggtgcacatacttcgagatttaaccagcatttatgagatcgcttgctatctattttcatctgacgatggttggaaatgtttttttcag

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37843620|gb|BJ601628.1|BJ601628
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67727802|gb|BJ978061.1|BJ978061
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCTAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37835295|gb|BJ593307.1|BJ593307
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67723608|gb|BJ973867.1|BJ973867
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67722681|gb|BJ972940.1|BJ972940
EST:     ATCAGTGGTTTCCTAGGACCTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162227600|gb|FC402307.1|FC402307
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|18335450|gb|BJ167470.1|BJ167470
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162224101|gb|FC400667.1|FC400667
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37832305|gb|BJ590317.1|BJ590317
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|18340253|gb|BJ172281.1|BJ172281
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162227601|gb|FC402308.1|FC402308
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37836344|gb|BJ594352.1|BJ594352
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162231956|gb|FC409030.1|FC409030
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|208372255|gb|DC948058.1|DC948058
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162188197|gb|FC363963.1|FC363963
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37840285|gb|BJ598293.1|BJ598293
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67573780|gb|BJ946604.1|BJ946604
EST:     GGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: GGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37849880|gb|BJ607888.1|BJ607888
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67721550|gb|BJ971809.1|BJ971809
EST:     TCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: TCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162174832|gb|FC351624.1|FC351624
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37852310|gb|BJ610318.1|BJ610318
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162187793|gb|FC364172.1|FC364172
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37831671|gb|BJ589683.1|BJ589683
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37835840|gb|BJ593852.1|BJ593852
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37825506|gb|BJ583572.1|BJ583572
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|18336621|gb|BJ168644.1|BJ168644
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67724396|gb|BJ974655.1|BJ974655
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162192779|gb|FC370137.1|FC370137
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37847368|gb|BJ605376.1|BJ605376
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|208362837|gb|DC950637.1|DC950637
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|208369244|gb|DC944561.1|DC944561
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67721362|gb|BJ971621.1|BJ971621
EST:     ATCAGTGGTTTCCTAGAACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162157638|gb|FC332960.1|FC332960
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162185056|gb|FC362502.1|FC362502
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162152328|gb|FC328515.1|FC328515
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162274215|gb|FC449975.1|FC449975
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37848300|gb|BJ606308.1|BJ606308
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162164607|gb|FC341902.1|FC341902
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|18335970|gb|BJ167991.1|BJ167991
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67697167|gb|BJ957400.1|BJ957400
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67693000|gb|BJ953233.1|BJ953233
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37839012|gb|BJ597020.1|BJ597020
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162153927|gb|FC329434.1|FC329434
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162254758|gb|FC431047.1|FC431047
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37828489|gb|BJ586501.1|BJ586501
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162272188|gb|FC448697.1|FC448697
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37825584|gb|BJ583650.1|BJ583650
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67691646|gb|BJ951879.1|BJ951879
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162182308|gb|FC357179.1|FC357179
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162262897|gb|FC439290.1|FC439290
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37843368|gb|BJ601376.1|BJ601376
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|18338297|gb|BJ170321.1|BJ170321
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37837367|gb|BJ595375.1|BJ595375
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37850428|gb|BJ608436.1|BJ608436
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|18340265|gb|BJ172293.1|BJ172293
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37851349|gb|BJ609357.1|BJ609357
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162170887|gb|FC346578.1|FC346578
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|67726749|gb|BJ977008.1|BJ977008
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162166828|gb|FC343005.1|FC343005
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37847348|gb|BJ605356.1|BJ605356
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|208395260|gb|DC916069.1|DC916069
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162187792|gb|FC364171.1|FC364171
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|208375136|gb|DC944861.1|DC944861
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTNTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162164608|gb|FC341903.1|FC341903
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTG
EST: gi|37848531|gb|BJ606539.1|BJ606539
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37849743|gb|BJ607751.1|BJ607751
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|162166829|gb|FC343006.1|FC343006
EST:     ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
EST: gi|37834360|gb|BJ592372.1|BJ592372
EST:     ATCAGTGGTTTCNTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTG                         GATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG
genomic: ATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattc ... tttttttcagGATTTTGGGAGACGTTTTCATGGGAGTATATCACACAGTTTTCGATTTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACATTCTCAAAATTGGGGAAGGAGCAGAGGCGCAGTGCATCAGTGGTTTCCTAGGACTTGATGTCCCTCCTCCAGCAGGGCCTCTGTGgtatgaattcttcgtcccggtttcatggtgcacatacttcgagatttaaccagcatttatgagatcgcttgctatctattttcatctgacgatggttggaaatgtttttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC