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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgcttaagcgtaggtatgtgtgaactcgcgtgtgtgactgttggcttggtaaaaggtatggcagtttgccctgactaggtgatttctcttggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208394252|gb|DC933920.1|DC933920
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18367762|gb|BJ199845.1|BJ199845
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATA
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATA
EST: gi|208356135|gb|DC902213.1|DC902213
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18354369|gb|BJ186425.1|BJ186425
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18327174|gb|BJ159176.1|BJ159176
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACA
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACA
EST: gi|67709535|gb|BJ965351.1|BJ965351
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18373100|gb|BJ204702.1|BJ204702
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100443113|gb|BY981739.1|BY981739
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100401523|gb|BY954573.1|BY954573
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18327738|gb|BJ159741.1|BJ159741
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162248590|gb|FC425366.1|FC425366
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100365835|gb|BY967170.1|BY967170
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18367970|gb|BJ200054.1|BJ200054
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|67702856|gb|BJ963089.1|BJ963089
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCAT
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCAT
EST: gi|100359537|gb|BY947032.1|BY947032
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18328390|gb|BJ160395.1|BJ160395
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100409102|gb|BY991858.1|BY991858
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100442060|gb|BY962953.1|BY962953
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18346473|gb|BJ178516.1|BJ178516
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCA
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCA
EST: gi|18363070|gb|BJ195142.1|BJ195142
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGT
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGT
EST: gi|18372793|gb|BJ204395.1|BJ204395
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18352921|gb|BJ184976.1|BJ184976
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100408544|gb|BY974184.1|BY974184
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162157639|gb|FC332961.1|FC332961
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162153928|gb|FC329435.1|FC329435
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100358471|gb|BY983922.1|BY983922
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18355354|gb|BJ187413.1|BJ187413
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCAT
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCAT
EST: gi|67704168|gb|BJ964401.1|BJ964401
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCC                         CTGGCTTGCTACTTTC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTC
EST: gi|18368640|gb|BJ200725.1|BJ200725
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTATTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18345072|gb|BJ177113.1|BJ177113
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162231957|gb|FC409031.1|FC409031
EST:     CACCNGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: CACC-GGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18366942|gb|BJ199022.1|BJ199022
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100367681|gb|BY984765.1|BY984765
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18355060|gb|BJ187119.1|BJ187119
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|208391424|gb|DC937572.1|DC937572
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100416581|gb|BY975456.1|BY975456
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|67569734|gb|BJ942558.1|BJ942558
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|67719530|gb|BJ969789.1|BJ969789
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18347698|gb|BJ179745.1|BJ179745
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100367922|gb|BY948157.1|BY948157
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|67712683|gb|BJ966132.1|BJ966132
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18330489|gb|BJ162495.1|BJ162495
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAG
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAG
EST: gi|67718260|gb|BJ968519.1|BJ968519
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162274216|gb|FC449976.1|FC449976
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18369130|gb|BJ201215.1|BJ201215
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162185057|gb|FC362503.1|FC362503
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100358422|gb|BY983897.1|BY983897
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162188198|gb|FC363964.1|FC363964
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|208361291|gb|DC930330.1|DC930330
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100414647|gb|BY956795.1|BY956795
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCGGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18368814|gb|BJ200899.1|BJ200899
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACA
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACA
EST: gi|18372855|gb|BJ204457.1|BJ204457
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18366961|gb|BJ199041.1|BJ199041
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162182309|gb|FC357180.1|FC357180
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100388408|gb|BY952010.1|BY952010
EST:     ACACCGGGAGCTCCAATCTCTGCGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162266083|gb|FC442768.1|FC442768
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162277812|gb|FC454275.1|FC454275
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18329815|gb|BJ161821.1|BJ161821
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100446136|gb|CJ970435.1|CJ970435
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18353821|gb|BJ185876.1|BJ185876
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTT
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTT
EST: gi|100387632|gb|BY951632.1|BY951632
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18356978|gb|BJ189037.1|BJ189037
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|67508427|gb|BJ941294.1|BJ941294
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100446181|gb|CJ970480.1|CJ970480
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCTGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|208356996|gb|DC930026.1|DC930026
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162255640|gb|FC431638.1|FC431638
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162174833|gb|FC351625.1|FC351625
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|18361120|gb|BJ193184.1|BJ193184
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100443032|gb|BY981658.1|BY981658
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162262898|gb|FC439291.1|FC439291
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100414112|gb|BY975086.1|BY975086
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162192060|gb|FC367273.1|FC367273
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|162192780|gb|FC370138.1|FC370138
EST:     ACACCGGGAGCTCCAACCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
EST: gi|100410404|gb|BY992089.1|BY992089
EST:     ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCG                         CTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC
genomic: ACACCGGGAGCTCCAATCTCTGGGTCCCGTCTGCCAAGTGCTACTTGTCGgtgcgtttct ... tggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggtaaaaggtatggcagtttgccctgactaggtgatttctcttggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG
                        ccctgac  putative branch site (score: 3)
                                      tttctctt  putative PPT
     taaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcttaagcgtaggtatgtgtgaactcgcgtgtgtgactgttggcttggtaaaaggtatggcagtttgccctgactaggtgatttctcttggtttgcagCTGGCTTGCTACTTTCATCATAGGTACAAATCAGGCAAGTCGAGCACATACAAGGAAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG