1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagaacttgtttatttgtttaagtcctgtttcttcttatttttatttgtttatcttgttgttgtggattggttaaatctttgaggcttcataatgtatcagcttgttattttttgaaacattccagttgcatgtcaggtattgattttgttgatgaatgcttatttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCCAGCAGTGCAAGATGGTTGTTCAGCAGTATGGTGACCAGATTGTTGAGA
species | Physcomitrella patens |
transcript | PP1S93_73V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162187793|gb|FC364172.1|FC364172
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|208362837|gb|DC950637.1|DC950637
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162231957|gb|FC409031.1|FC409031
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|161982347|gb|EE296254.1|EE296254
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162162646|gb|FC338948.1|FC338948
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162180470|gb|FC356112.1|FC356112
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|208375136|gb|DC944861.1|DC944861
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: TGCTNGACCATCG GGAATCG-TGCAG-AATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162262898|gb|FC439291.1|FC439291
genomic: TGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162164608|gb|FC341903.1|FC341903
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCEST: gi|162192060|gb|FC367273.1|FC367273
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG GGAATCGTTGCAGAAATCA
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCA
acattccagttgcatgtcaggtattgattttgttgatgaatgcttatttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCCAGCAGTGCAAGATGGTTGTTCAGCAGTATGGTGACCAGATTGTTGAGA
cttatttct CT-rich tract
tattgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaacttgtttatttgtttaagtcctgtttcttcttatttttatttgtttatcttgttgttgtggattggttaaatctttgaggcttcataatgtatcagcttgttattttttgaaacattccagttgcatgtcaggtattgattttgttgatgaatgcttatttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGCCAGCAGTGCAAGATGGTTGTTCAGCAGTATGGTGACCAGATTGTTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG