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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGAATGGTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaacttgtttatttgtttaagtcctgtttcttcttatttttatttgtttatcttgttgttgtggattggttaaatctttgaggcttcataatgtatcagcttgttattttttgaaacattccagttgcatgtcaggtattgattttgttgatgaatgcttatttctgtag

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162227601|gb|FC402308.1|FC402308
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162187793|gb|FC364172.1|FC364172
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|208362837|gb|DC950637.1|DC950637
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162231957|gb|FC409031.1|FC409031
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|161982347|gb|EE296254.1|EE296254
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162162646|gb|FC338948.1|FC338948
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162180470|gb|FC356112.1|FC356112
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|208375136|gb|DC944861.1|DC944861
EST:     TGCTNGACCATCG                         GGAATCG-TGCAG-AATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: TGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162262898|gb|FC439291.1|FC439291
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162164608|gb|FC341903.1|FC341903
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCAACCAGGCCATTGGTGCTACTGGTGTTGTTAGC
EST: gi|162192060|gb|FC367273.1|FC367273
EST:     GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCG                         GGAATCGTTGCAGAAATCA
genomic: GTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaactt ... atttctgtagGGAATCGTTGCAGAAATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCGAATGGTTGCACTGCCATTGCTGATTCCGGCACGTCGCTGCTTGCTGGACCATCGgtgagaacttgtttatttgtttaagtcctgtttcttcttatttttatttgtttatcttgttgttgtggattggttaaatctttgaggcttcataatgtatcagcttgttattttttgaaacattccagttgcatgtcaggtattgattttgttgatgaatgcttatttctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA