Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCCATTGTGCACAGTATGTGAAATGGCTGTTGTGTGGGCCCAGAACCAGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaattagtgcaacatcatttggagggtgttgatatttgcatggatacttgttctatttttagccttggttgtaagtacttggtgttcgttccctctttttgagctcaattcatgtgtttgtaatcgtatgttactaatgccatacttcgtcgttcag

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37843620|gb|BJ601628.1|BJ601628
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|67727802|gb|BJ978061.1|BJ978061
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37835295|gb|BJ593307.1|BJ593307
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAGTGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|67723608|gb|BJ973867.1|BJ973867
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162227600|gb|FC402307.1|FC402307
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|18335450|gb|BJ167470.1|BJ167470
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37832305|gb|BJ590317.1|BJ590317
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|18340253|gb|BJ172281.1|BJ172281
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162227601|gb|FC402308.1|FC402308
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37836344|gb|BJ594352.1|BJ594352
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162231956|gb|FC409030.1|FC409030
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|208372255|gb|DC948058.1|DC948058
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162188197|gb|FC363963.1|FC363963
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37840285|gb|BJ598293.1|BJ598293
EST:     TCAGAACAGAACAAAAGAGCAGATCGNCGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: TCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37849880|gb|BJ607888.1|BJ607888
EST:     CTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: CTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162174832|gb|FC351624.1|FC351624
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37852310|gb|BJ610318.1|BJ610318
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162187793|gb|FC364172.1|FC364172
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37831671|gb|BJ589683.1|BJ589683
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37835840|gb|BJ593852.1|BJ593852
EST:     AGCTCAGTCAGANCAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37825506|gb|BJ583572.1|BJ583572
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|67724396|gb|BJ974655.1|BJ974655
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162192779|gb|FC370137.1|FC370137
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37847368|gb|BJ605376.1|BJ605376
EST:     TCAGTCAGACCAGACCAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: TCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|208362837|gb|DC950637.1|DC950637
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|208369244|gb|DC944561.1|DC944561
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162157638|gb|FC332960.1|FC332960
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162185056|gb|FC362502.1|FC362502
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162152328|gb|FC328515.1|FC328515
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162274215|gb|FC449975.1|FC449975
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37848300|gb|BJ606308.1|BJ606308
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162164607|gb|FC341902.1|FC341902
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|161982347|gb|EE296254.1|EE296254
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGAC-CTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAA
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAA
EST: gi|162162646|gb|FC338948.1|FC338948
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|18335970|gb|BJ167991.1|BJ167991
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162180470|gb|FC356112.1|FC356112
EST:     GCTCAGTCAGAACAGAAACAAA-GAGCAGATCGACGCTTACTTGA-CCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: GCTCAGTCAGAACAGAA-CAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|67693000|gb|BJ953233.1|BJ953233
EST:     CAGTCAGAACAGANCAAAAGAGCAGATCGACGCTTACCTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: CAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37839012|gb|BJ597020.1|BJ597020
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162153927|gb|FC329434.1|FC329434
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162254758|gb|FC431047.1|FC431047
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37828489|gb|BJ586501.1|BJ586501
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162272188|gb|FC448697.1|FC448697
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37825584|gb|BJ583650.1|BJ583650
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|67691646|gb|BJ951879.1|BJ951879
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162182308|gb|FC357179.1|FC357179
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162262897|gb|FC439290.1|FC439290
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37843368|gb|BJ601376.1|BJ601376
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|18338297|gb|BJ170321.1|BJ170321
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37850428|gb|BJ608436.1|BJ608436
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|18340265|gb|BJ172293.1|BJ172293
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37851349|gb|BJ609357.1|BJ609357
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|67726749|gb|BJ977008.1|BJ977008
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162166828|gb|FC343005.1|FC343005
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37847348|gb|BJ605356.1|BJ605356
EST:     ATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: ATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|208395260|gb|DC916069.1|DC916069
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|208375136|gb|DC944861.1|DC944861
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162164608|gb|FC341903.1|FC341903
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37848531|gb|BJ606539.1|BJ606539
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37849743|gb|BJ607751.1|BJ607751
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|162166829|gb|FC343006.1|FC343006
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
EST: gi|37834360|gb|BJ592372.1|BJ592372
EST:     AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAG                         CTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT
genomic: AGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaa ... cgtcgttcagCTTTGTGAGCGATTGCCAAGTCCGAATGGCGAGTCTGCGGTAGATTGCAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATCCATTGTGCACAGTATGTGAAATGGCTGTTGTGTGGGCCCAGAACCAGCTCAGTCAGAACAGAACAAAAGAGCAGATCGACGCTTACTTGAACCAGgtagttaaaattagtgcaacatcatttggagggtgttgatatttgcatggatacttgttctatttttagccttggttgtaagtacttggtgttcgttccctctttttgagctcaattcatgtgtttgtaatcgtatgttactaatgccatacttcgtcgttcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT