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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCTTCTGGCGGTGAGTTGGTTTTAGGTGGTGTTGACCCTAAGCACTTCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcattccatagtggagagtttcggttgatgtatttattgctgttcttttcgttccgttattgtaggctctatcaatttgtaaattcagccaaacaacgcttaacttgtgtttttattcgtttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S93_73V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162227601|gb|FC402308.1|FC402308
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162187793|gb|FC364172.1|FC364172
EST:     CTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: CTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162231957|gb|FC409031.1|FC409031
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|161982347|gb|EE296254.1|EE296254
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162162646|gb|FC338948.1|FC338948
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162180470|gb|FC356112.1|FC356112
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162262898|gb|FC439291.1|FC439291
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162164608|gb|FC341903.1|FC341903
EST:     CGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: CGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
EST: gi|162192060|gb|FC367273.1|FC367273
EST:     TCAAGGGTGAACACGTTTATACTCCTGTGACACGCAAGGGATACTGGCAG                         TTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG
genomic: TCAAGGGTGAACACGTTTATACTCCTGTGACGCGCAAGGGATACTGGCAGgtaagtcatt ... gtttgtgcagTTTGATCTTGGTGATGTAACCATCAATGGACGCACCACAGGTTTCTGTGCG