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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCCAAAGATTTAAATCATATTGATGTCCTTACCAAGAGgtatcaatgctggttaatttcctattttaatcatggaagcacctttttgtagaattacaatttgtttcttttcttaagccagagacttttctgtactact...

Basic information

species Glycine max
transcript GLYMA20G35310.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os03g06720.1 (Oryza sativa), 5'ss of exon 9
AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCCAAAGATTTAAATCATATTGATGTCCTTACCAAGAGgta-----tcaatgctggttaatttcctattttaatcatggaagcacctt-tttgtagaattacaatttgtttcttttcttaagccagagacttttctgtactact
||||||| |||||| | ||||||||||| ||||| || || || | | | | ||| |   |||||||||||||||| |||||||| ||| | |||||||||||     |||       ||  || | |   || |   | ||  ||| || ||||    || | || |  ||    | |   |       || |||| |       
AGAGAATTCTTCTTCTATCTGATCTTCCCAGAAAGCAAATCGAGAAACTTGGAGATAGCTTTGCCAAAGATTTAAACCATATTGACGTCTTCACCAAGAGgtaaagggtcacgatcatttgcttccatccatttacgcttgacacactttctttgacatatcaaaactcattgagctcc---aattttttacatttcag-------

upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 9
lower sequence: GRMZM2G172410_T01 (Zea mays), 5'ss of exon 8
AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCCAAAGATTTAAATCATATTGATGTCCTTACCAAGAGgtatcaatgctggtta--------atttcctattttaatca-tggaagcacctttttgtagaattacaatttgtttc---ttttcttaagccagagacttttctgtactact---------------------------------------------------------------------
||| |||||||||| | || ||||||||||| || |||||||||| | | ||||| |   | |||||||||||||| |||||||||||  | |||||||||||   |   |   ||         |||  | | | ||| | ||| ||     |||  |  |  |||  ||| |  |   ||  |||  ||     ||   |    |   |                                                                      
AGAAAATCCTTCTTCTCTCCGATCTTCCAAGGAAGCAGATTGATAAACTTGCAGATAGCTTGGCCAAAGATTTAAACCATATTGATGTATTCACCAAGAGgtaaagaaatttactattcatggtgttttttgtctgaataactggcaggtttatttaatctatctacc-tttatcccagtttcacttttgcggagaacacatgcacatcccataagcacaaatatttgctttgatatgttaataccgaaaactgattgtgccttctcattttaacttgcag

upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 9
AGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAGAGTAGCAGACAATATTGCCAAAGATTTAAATCATATTGATGTCCTTACCAAGAGgtatcaatgctggttaatttcctattttaatcatggaagcacctttttgtagaattacaatttgtttctttt-cttaagccagagacttttctgtactact
| ||||| |||||| | |||||||||||||| || ||||| || |   | || |||||||||||||||||  | |  |||||||||||||| || |||||||||   |  | | |  || | | |  ||||||  | || |||||   | | | |  ||| || | | |  | |  ||  | || | | || | |    | 
AAAGAATTCTTCTTCTTTCTGATCTTCCAAGGAAGCAGATGGACAAGCTGGCTGACAATATTGCCAAAGACCTTAGCCATATTGATGTCCTAACAAAGAGgtatagttaatagattcttccttttgctaatcagagcagtaccttccaggaaagtctcaaattatctttcctgcacaatgctgaaaatcttttatttgtc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208070753|gb|GD870114.1|GD870114
EST:     GCAGACAATATTGCCAAAGATTTAAATCATATTGATGTCCTTACCAAGAG                         TTGCAGCCTTAGTTTGACTAAATCATTTGAAAGAGCAGCAGCTAACAAGGC
genomic: GCAGACAATATTGCCAAAGATTTAAATCATATTGATGTCCTTACCAAGAGgtatcaatgc ... ggctttacagTTGCAGCCTTAGTTTGACTAAATCATTTGAAAGAGCAGCAGCTAACAAGGC