1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...taacaaacgaacaatgctgaggagtgaggacccttttatttaatgtctacatggttgctgttgtagcagttcagtttactctcttgttctcttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTTTCTGAGAGAGCATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGA
species | Glycine max |
transcript | GLYMA20G35310.1 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAG GATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTTEST: gi|10233542|gb|BE802430.1|BE802430
genomic: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAGgtaatatctt ... cttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTT
EST: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAG GATATTGGCCTTTACATGAAAGAAGGAGAGEST: gi|7028907|gb|AW458690.1|AW458690
genomic: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAGgtaatatctt ... cttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAG
EST: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAG GATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTTEST: gi|209723743|gb|BW657725.1|BW657725
genomic: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAGgtaatatctt ... cttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTT
EST: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAG GATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTT
genomic: AAGTTTGGAAAGACGTATTAAATGCGGAGGGAGATGAAATATATGTTAAGgtaatatctt ... cttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTT
tctacatggttgctgttgtagcagttcagtttactctcttgttctcttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTTTCTGAGAGAGCATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGA
tttactctcttgttct CT-rich tract
tcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacaaacgaacaatgctgaggagtgaggacccttttatttaatgtctacatggttgctgttgtagcagttcagtttactctcttgttctcttattgcagGATATTGGCCTTTACATGAAAGAAGGAGAGAATCCATCATTTTCTGAGCTTTCTGAGAGAGCATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - -caatgct
- - - - - - - - - - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt