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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatttttaccttctctctatctctgtcttgcatatcttttatgctgatagggactattcattttgaaatattagttattcttatgaaacagagaggtaaagcatagttggattgaattggatattttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA

Basic information

species Glycine max
transcript GLYMA20G35310.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35310.1 (Glycine max), 3'ss of exon 20
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 3'ss of exon 19
gtgacatttttaccttctctctatctctgtcttgcatatcttttatgctgatagggactattcattttgaaatattagttattcttatgaaacagagaggtaaagcatagttggattgaattggatattttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
           |   |   ||||  ||| || || |    |||| |  || || ||||             ||||   ||  | |||||     ||||  | |||         | |    ||  |   ||  ||||||||||||| ||||| ||||||||||| ||||||||||| ||||||
-----------aaggtgcatctagttct-tcatgtaatatttttttagtggtaaggac-----------ggatatctatttcttttatgt----gagaactgaag--------aaatacgatgagtgcatttcagGTGCAAAATCTGGTTGCTGAAATTGTTGACTCAAAATTGGGCAAACAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233542|gb|BE802430.1|BE802430
EST:     CTTATTCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTTGGGGTTAAG                         GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
genomic: CTTATTCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTTGGGGTTAAGgtgacatttt ... tattttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
EST: gi|7028907|gb|AW458690.1|AW458690
EST:     CTTATTCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTTGGGGTTAAG                         GTGCAAAATCTAGTTGCACAAATTGTTGATTCAAAATTGGGGAAACAA
genomic: CTTATTCTCTCCTCCTTGCTGAAAATATCTGCAACAAACTTGGGGTTAAGgtgacatttt ... tattttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
EST: gi|209723743|gb|BW657725.1|BW657725
EST:     GCAACAAACTTGGGGTTAAG                         GTGCAAAATCTAGTTGCAGAAA-TGTTGATTCAAAATTGGGGAAACAA
genomic: GCAACAAACTTGGGGTTAAGgtgacatttt ... tattttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttatgaaacagagaggtaaagcatagttggattgaattggatattttgtagGTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA
                                            atattttgta  TA-rich tract