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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTATTATCTGTGGGATGAATAGTCATCTTCCCTTCATATTAAAGCAGTTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACAGCTACAGCTAGgtaaatggttcagacaaggtagtttcccattgcccttatcttgtgttctgatttctggcttctgcaatatgctttttcatctctacgcag

Basic information

species Glycine max
transcript GLYMA20G35310.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 8
ATATTATTATCTGTGGGATGAATAGTCATCTTCCCTTCATATTAAAGCAGTTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACAGCTACAGCTAGgtaaatggttcagacaaggtagtttcccattgcccttatcttgtgttctgatttctggcttctgcaatatgcttttt-catctctacgcag
||||  |||| ||||| || |||||||||||  |||||||| | |||||| |||||||||||||||| ||| |||| | ||||||||| ||||||||||||||| ||||||  | |  |    |||  | |  |  ||   ||||||   | | |||||| ||   ||        | ||| | |  ||||
ATATCGTTATTTGTGGAATCAATAGTCATCTGACCTTCATACTGAAGCAGCTAAATAAGTATCATGAGTTTGCTGTGCGCTTAGGCACTGCTACAGCTAGgtaattggttcttataccgccagttcaaaatatcagtacaatgtgtttgaaatactggctcctatgatccctcgggtgcatatatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601098|gb|BQ611429.1|BQ611429
EST:     TTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACACCTACAGCTAG                         GAGGCAGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAG
genomic: TTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACAGCTACAGCTAGgtaaatggtt ... ctctacgcagGAGGCAGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAG
EST: gi|208070753|gb|GD870114.1|GD870114
EST:     TTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACAGCTACAGCTAG                         GAGGCAGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAG
genomic: TTAAATAAGTATCATGAATTTTCTGTTCTCTTAGGCACAGCTACAGCTAGgtaaatggtt ... ctctacgcagGAGGCAGAGAATCCTTCTTATGTCTGATCTTCCAAGAAAACAGATTGATAG