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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctcttgttttttttttaacctttcaaattttatactgtggtgtcttttgatgatgatattatataaaatgctgcag

Basic information

species Glycine max
transcript GLYMA20G35310.1
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 21
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 20
GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaatt----ctcttgtttttttttt-----------------aacctttcaaattttatactgtggtgtct--tttgatgatgatatt-----atataaaatgctgcag
||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||     || ||| | | | | |                 ||| |||   ||||| |  | || | ||    || ||| |  | ||     |  |  ||  || |||
GTGCAAAATCTGGTTGCTGAAATTGTTGACTCAAAATTGGGCAAACAAgtaatctttccttttgctctctctctctgtgtttccttgtctgaacatttgtgattttgtcttttgttttccaacttaatggtattttttgcccacttggaaccctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10233542|gb|BE802430.1|BE802430
EST:     GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAA                         ATTAGTAGAATCAAGCCATCAGTGACCTACATTGCAGCAGAGGAAATAATG
genomic: GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctct ... aatgctgcagATTAGTAGAATCAAGCCATCAGTGACCTACATTGCAGCAGAGGAAATAATG
EST: gi|7028907|gb|AW458690.1|AW458690
EST:     GTGCAAAATCTAGTTGCACAAATTGTTGATTCAAAATTGGGGAAACAA                         ATTAGTAGAATCAAGCCATCAGTGACCTACATTGCAGCAGAGGAAATAATG
genomic: GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctct ... aatgctgcagATTAGTAGAATCAAGCCATCAGTGACCTACATTGCAGCAGAGGAAATAATG
EST: gi|209723743|gb|BW657725.1|BW657725
EST:     GTGCAAAATCTAGTTGCAGAAA-TGTTGATTCAAAATTGGGGAAACAA                         ATTAGTAGAATCAAGCCATCAGTGACCTACATTGCAGCAGAGGAAATAATG
genomic: GTGCAAAATCTAGTTGCAGAAATTGTTGATTCAAAATTGGGGAAACAAgtaattctct ... aatgctgcagATTAGTAGAATCAAGCCATCAGTGACCTACATTGCAGCAGAGGAAATAATG