1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtacgccaacagcagtccaaatttattttcccagtacttcattttgaacatgctactcacaaacctttttccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGACTCCTTGATAGTCATATCTGAGCTGGAAGGAGAGCAACCCGTCGTTTTGT
species | Glycine max |
transcript | GLYMA20G35310.1 |
intron # | 24 |
splice site | 3' |
intron type | U2 |
EST: CATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGACEST: gi|213612234|gb|DB976839.1|DB976839
genomic: CATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAATgtacgccaac ... ccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGAC
EST: ACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCAGTTCCCAAGACAGAGCCTCTCTCTCTTGAAATGACTGACEST: gi|7028907|gb|AW458690.1|AW458690
genomic: ACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAATgtacgccaac ... ccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGAC
EST: CATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGACEST: gi|209723743|gb|BW657725.1|BW657725
genomic: CATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAATgtacgccaac ... ccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGAC
EST: CATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAAT GTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGAC
genomic: CATATTTACGGAGAGAAGTAGCCATAGGATATGTGAAGAACAAGAAGAATgtacgccaac ... ccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGAC
ttttcccagtacttcattttgaacatgctactcacaaacctttttccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGACTCCTTGATAGTCATATCTGAGCTGGAAGGAGAGCAACCCGTCGTTTTGT
tactcac putative branch site (score: 1)
cctttttccatttgt putative PPT
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccaacagcagtccaaatttattttcccagtacttcattttgaacatgctactcacaaacctttttccatttgtagGTAATCAACCCAGTTCCCAAGTCTGAGCCTCTCTCTCTTGAAATGACTGACTCCTTGATAGTCATATCTGAGCTGGAAGGAGAGCAACCCGTCGTTTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA