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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctgaattattaagcattcattaagcaatattttctgtgcatgccattaattttgagtcttcacaacag

Basic information

species Glycine max
transcript GLYMA20G35310.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172410_T01 (Zea mays), 5'ss of exon 6
CAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaat----ctgaattattaagcattcattaagcaatattttctgtgcatgccattaattttgagtcttcacaacag-----------
|||   ||||||||||||||||| ||||| ||  ||||||| || ||||||||||| || || |||||| |  ||||| | ||||| ||||||||||| || |  |    |  ||||||     | | |   |  ||| || | | |  |||| |    |||    | | | || | |           
CAAAAGACACGTGTTGAGCGTGTCATTGGGTTCTTTCTTGCTATCTGGGGTATATTATTCTATTCTCGATTATTAAGTGCAATGACAGAACAATTTAGAgtgagttatttcataattatctgaaactgagataaaaattttctatattgatgc-acctttttgacatatactcacctggttgtccacag

upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 7
CAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatct-gaattattaagcattcattaagcaatattttctgtgcatgccattaatt--ttgagtcttcacaacag
|||   |||||  ||||  | || ||||| ||| | || || || ||||| ||||||||||||||||| ||  |||| || ||||| ||||||||| ||||||  ||| ||  ||   |  | |  | ||  |  | | |   |   | | | |   |  | |  |  ||    |||
CAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGGgtaagttcttgagataaacactactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcag

upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 7
CAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatct-gaattattaagcattcattaagcaatattt-tctgtgcatgccattaattttga--gtcttcacaacag
|||  ||||| | |||  ||||||||||||||| ||||||| |||||||| |||||||||||||| || ||  | ||||| ||||| |||||||| || ||||  ||| |||     |||| || | |||    |||   | ||| |||     |  || |||   || |    ||||
CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcatttacctccttatgaccatcatttggacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193693913|gb|FK629085.1|FK629085
EST:     TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGG                         AGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
genomic: TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
EST: gi|193600921|gb|FK551200.1|FK551200
EST:     TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGG                         AGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
genomic: TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
EST: gi|193687817|gb|FK633060.1|FK633060
EST:     TTTTACTCTCGACTTTCTTAAGTACGATGACTGAACAATTTAGG                         AGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
genomic: TTTTACTCTCGAC-TTC-TAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
EST: gi|21601098|gb|BQ611429.1|BQ611429
EST:     GTATATTGTTTTACTCTCGACTTCTAAGTACGATGTCTTAATAATTTAGG                         AGTAATATGCAAAAGCTTAGGGAGGGAGTCCAAATGCAAGTTCTGGAGACT
genomic: GTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
EST: gi|193465919|gb|FK433832.1|FK433832
EST:     TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGG                         AGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
genomic: TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacagAGTAATATGCAAAAGCTTAGGGAGGGAGCCCAAATGCAAGTTCTGGAGACT
EST: gi|193462606|gb|FK426363.1|FK426363
EST:     TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGG                         T
genomic: TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacag-
EST: gi|193462606|gb|FK426363.1|FK426363
EST:     TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGG                         T
genomic: TTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatctg ... ttcacaacag-