1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
...tgtctatgtcaatatcatggttgtattctgctcaaatatgttgggtaaattgatgtacttagtgctagctaaatctctcaaaacacaatatgtttttcagGGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTCAGAATGACCCATAAGCAGCTGTATAATCTAATGATAAAAGTTGGCCAAG
species | Glycine max |
transcript | GLYMA20G35310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGGCTCCGAGTTTGTTTGGATGAAGAAAAATA-TA-TAGTACTCAG GGTCCACAGGCTAGAAGCATGATACAATTTTANGTCATTGTACAEST: gi|213607665|gb|DB958684.1|DB958684
genomic: ATTTGGGCTCCGAGTTTGTTTGGATGAAGAAAAATAATAATAGTACTCAGgtgagaaatg ... tgtttttcagGGTCCACAGGCTAGAAGCATGATACAATTT-ATGTCATTGTACA
EST: ATTTGGGCTCCGAGTTTGTTTGGATGAAGAAAAATAATAATAGTACTCAG GGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTCEST: gi|209723742|gb|BW657724.1|BW657724
genomic: ATTTGGGCTCCGAGTTTGTTTGGATGAAGAAAAATAATAATAGTACTCAGgtgagaaatg ... tgtttttcagGGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTC
EST: ATTTGGGCTCCGAGTTTGTTTGGATGAAGAAAAATAATAATAGTACTCAG GGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTC
genomic: ATTTGGGCTCCGAGTTTGTTTGGATGAAGAAAAATAATAATAGTACTCAGgtgagaaatg ... tgtttttcagGGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTC
taaattgatgtacttagtgctagctaaatctctcaaaacacaatatgtttttcagGGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTCAGAATGACCCATAAGCAGCTGTATAATCTAATGATAAAAGTTGGCCAAG
agctaaa putative branch site (score: 3)
tgtttttc putative PPT
aatatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtctatgtcaatatcatggttgtattctgctcaaatatgttgggtaaattgatgtacttagtgctagctaaatctctcaaaacacaatatgtttttcagGGTCCACAGGCTAGAAGCATGATACAATTTATGTCATTGTACATCATACTCAGAATGACCCATAAGCAGCTGTATAATCTAATGATAAAAGTTGGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- -ctatgtc
- - - - - - - - - ggttgta
- - - - - - - - - - - - - -ctgctca
- - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaca