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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGTAGAGCCAGTAGAAAATGTTGCATCGAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatctatgttctctacatttcatatatgccatgtttgcatggattacttcctatttcttaaatattctgtaatggtattttatatttatttcat...

Basic information

species Glycine max
transcript GLYMA20G35310.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g06720.1 (Oryza sativa), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTTGCATCGAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatctatgttctctacatttcatatatgccatgtttgcatggattacttcctatttcttaaatattctgtaatggtattttatatttatttcat-
|| ||  |||| || || |  | ||| || || || ||||| || || ||| |||| ||||| ||||| || ||||||||||||||||| |||||||  |||| ||     || ||    | || |  |   ||  |  |||  ||| |  |  |   |  | |  | |  ||| ||| |       |  ||  |||||  
AATGTGCAGCCGGTGGAGATGGCTGCTTCTAAGCTGTTTGTGCAGTGTTCTAGGCAAAAGGGTCTTATTAAAATCTACAGGCACTTGCTTAATTATCACAgtattgttctaatcttactgatatatttttgttgatacattt-tatgtagaaggttgcagatttgcagttatctttaaggactaccaactttgttttcaca

upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTTGCATCGAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatctatgttctctacatttcatatatgccatgtttgcatggattacttcctatttct--taaatattctgtaatggtattttatatttatttcat
||||| ||||| || ||||||||| | || ||| | ||||| |||||||| || || || |  ||||||||||||||||||||| | ||||||||   |||||| |  |   |      ||| || |   | |    ||| |  |    ||| ||| | ||| |  | || | |   ||||   |  |  || || || || 
AAAGTGGAGCCGGTTGAAAATGTTACGTCCAAATTGTTTGTCCAATGCTCACGTCAAAAAGACCTTATAAAGATCTACAGGCACCTACTAAATTACTCAAgtacggtgtgctttcagcttactttac---tgttatctgtatagaatttttagttcatgtttgtagtcaagactaattaataccaagtc-tacttgttgcag

upper sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 12
AAAGTAGAGCCAGTAGAAAATGTTGCATCGAAACTATTTGTTCAATGCTCTCGGCAGAAGGGACTTATAAAGATCTACAGGCACTTGCTAAATTATCGAAgtactgcatctatgttctctacatttcatatatgccatgtttgcatggattacttcctatttcttaaatattctgtaatggtattttatatttatttcat-
||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||| || || ||||||||||  || || || |||||||||||||||   | ||   |   || | || ||   |  || ||  || |    |||     ||       |||      ||    | |  | |   |       
AAAGTTGAGCCAGTAGAAAATGTTGCATCCAAACTACTGGTTCAATGCTCTCGGCAAAAGGGCCTGATCAAGATCTACAAACATTTACTTAATTATCGAAgtactttctataatcttgttaaaatt-atgactttcaagtaagctttttctacaaaagataaaaagtataaaacaaaagcaaaataaaaaacaaagaagca