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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatatgatgatttcagatttcacaaccattttggtgtgtctgaaaatattaatgtgatggtggggtttttaagtaaaaggtgtattgagtggtcatttgacacagtgttgaatgattgcag

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693081|gb|AW761179.1|AW761179
EST:     AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAAC                         AGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGG
genomic: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatat ... atgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGG
EST: gi|21677520|gb|BQ629871.1|BQ629871
EST:     AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAAC                         AGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGG
genomic: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatat ... atgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGG
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAAC                         AGACAGAAGGGA
genomic: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatat ... atgattgcagAGACAGA-GGGA