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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaataatttcattttggaattgttctttgttttgtttgatggtttaattaacggtgtttgtattttgattcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39470.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv04s0044g00280.t01 (Vitis vinifera), 3'ss of exon 2
-------gtaaaataatttcattttggaattgttctttgttttgtttgatggtttaattaacggtgt-ttgtattttgattcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG
        |  |  |||||  | ||  ||  ||| ||  |||  | |  |  | |   |||   | | || |  |  || |  || |||||||||| ||||| ||||| |||||||| || ||||||||||| || |||||  | ||| ||||||| |||   ||||||||
gtaaattatccatcaattttgtgtttcaagagtttttcctttcttatttttttcttcctaaatttttattctgatcggaatattgcagGAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACGATGTGCGGAGATTGGTAAAGCATCTTGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449163|gb|BQ253287.1|BQ253287
EST:     AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: gi|37996547|gb|CF808136.1|CF808136
EST:     AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGA
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGA
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: gi|254346601|gb|GR856323.1|GR856323
EST:     AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGGTTACGGAAGCATCCT
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGG-TTACGGAAGCATCCT
EST: gi|6070892|gb|AW100279.1|AW100279
EST:     GCTGCTGCAAAGCCCTC-CGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: GCTGCTGCAAAGCC-TCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: gi|10844098|gb|BF067435.1|BF067435
EST:     AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     ATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: ATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: gi|37996520|gb|CF808109.1|CF808109
EST:     AGCTGCTGCANAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGG
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGG
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG                         GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttgttttgtttgatggtttaattaacggtgtttgtattttgattcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG
                                              ttcctgt  CT-rich tract
                                  tttgtattttgatt  TA-rich tract