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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatagcataatattagcatctgattcatcaaatctttttggtactgttctgttgttcacatttggttgatatgctctctgttgtgctgacgcagATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTC

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693081|gb|AW761179.1|AW761179
EST:     ATTCCTGATTTTGCATACTCGCCCAATCCACACA                         ATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
genomic: ATTCCTGATTTTGCATACTCGCCCAATCCACACAgtgagtatag ... gctgacgcagATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     ATTCCTGATTTTGCATACTCGCCCAATCCACACA                         ATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
genomic: ATTCCTGATTTTGCATACTCGCCCAATCCACACAgtgagtatag ... gctgacgcagATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
EST: gi|21677520|gb|BQ629871.1|BQ629871
EST:     ATTCCTGATTTTGCATACTCGCCCAATCCACACA                         ATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
genomic: ATTCCTGATTTTGCATACTCGCCCAATCCACACAgtgagtatag ... gctgacgcagATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     ATTCCTGATTTTGCATACTCGCCCAATCCACACA                         ATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
genomic: ATTCCTGATTTTGCATACTCGCCCAATCCACACAgtgagtatag ... gctgacgcagATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCA
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     ATTCCTGATTTTGCATACTCGCCGAATCCACACA                         ATGGGAGCTCAGGGTCTGA
genomic: ATTCCTGATTTTGCATACTCGCCCAATCCACACAgtgagtatag ... gctgacgcagATGGGAGCTCAGGGTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtactgttctgttgttcacatttggttgatatgctctctgttgtgctgacgcagATGGGAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACGCAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACACGCGCCATCACCGTC
                                            tgctgac  putative branch site (score: 2)
                          ttgatat  TA-rich tract