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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaccttaattattaattaatactaattattaagttaataatattgggggattttatgaagcgcatgtgaagttattaatggtaattaatgatgatgttggtgtgggaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAG

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693081|gb|AW761179.1|AW761179
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|20449163|gb|BQ253287.1|BQ253287
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAA
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAA
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|21677520|gb|BQ629871.1|BQ629871
EST:     GAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     GGATGAGTGGGTG-AGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAGCACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGACAACCACTCAAGATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcatgtgaagttattaatggtaattaatgatgatgttggtgtgggaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAG
        aagttattaatggtaa  TA-rich tract