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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttcaattcaactcaacgcctttttttttttttgaattcagattagaaaataatataattaattaatatctctgttttgttttcctttgtag

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449163|gb|BQ253287.1|BQ253287
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|37996547|gb|CF808136.1|CF808136
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|254346601|gb|GR856323.1|GR856323
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|6070892|gb|AW100279.1|AW100279
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCCTC-CGGACATGGATAT
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCC-TCGCGGACATGGATAT
EST: gi|37997766|gb|CF809355.1|CF809355
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAA-GCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|209714628|gb|BW654040.1|BW654040
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCT
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCT
EST: gi|10844098|gb|BF067435.1|BF067435
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|37996520|gb|CF808109.1|CF808109
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCANAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAG                         TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA
genomic: AACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttca ... tcctttgtagTCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAAGACAACGACGAGGATTTAGATCCTTATGGTGGCTTGTTGGACGACGAACAGAAGAAGATTCTGGAGATTAAAGAACAACTGGAGGAGCCTGATCAGgtattgttcaattcaactcaacgcctttttttttttttgaattcagattagaaaataatataattaattaatatctctgttttgttttcctttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG