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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgaggtcaaagaaataataacctttttggcttagtgcttttctcctttggaaagttgaagctaacatattcattcttctattccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693081|gb|AW761179.1|AW761179
EST:     GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAG                         ATTCCTGATTTTGCATACTCGCCCAATCCACACA
genomic: GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGgttgaggtca ... ccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAG                         ATTCCTGATTTTGCATACTCGCCCAATCCACACA
genomic: GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGgttgaggtca ... ccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA
EST: gi|21677520|gb|BQ629871.1|BQ629871
EST:     GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAG                         ATTCCTGATTTTGCATACTCGCCCAATCCACACA
genomic: GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGgttgaggtca ... ccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAG                         ATTCCTGATTTTGCATACTCGCCCAATCCACACA
genomic: GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGgttgaggtca ... ccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     GAGACTCGTCGCCTGTGCAGACAACCACTCAAGATGGGCATCATCAGCGG                         ATTCCTGATTTTGCATACTCGCCGAATCCACACA
genomic: GAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATCAGCAGgttgaggtca ... ccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctcctttggaaagttgaagctaacatattcattcttctattccttttgcagATTCCTGATTTTGCATACTCGCCCAATCCACACA
                     agctaac  putative branch site (score: 2)
                             tattcattcttctatt  CT-rich tract
                        taacatatt  TA-rich tract