1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataatttcattttggaattgttctttgttttgtttgatggtttaattaacggtgtttgtattttgattcctgtag
species | Glycine max |
transcript | GLYMA04G39470.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACEST: gi|37996547|gb|CF808136.1|CF808136
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAEST: gi|20812089|gb|BQ296567.1|BQ296567
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGA
EST: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACEST: gi|254346601|gb|GR856323.1|GR856323
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGGTTACGGAAGCATCCTEST: gi|6070892|gb|AW100279.1|AW100279
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGG-TTACGGAAGCATCCT
EST: GCTGCTGCAAAGCCCTC-CGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACEST: gi|10844098|gb|BF067435.1|BF067435
genomic: GCTGCTGCAAAGCC-TCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACEST: gi|8286013|gb|BE023501.1|BE023501
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: ATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACEST: gi|37996520|gb|CF808109.1|CF808109
genomic: ATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
EST: AGCTGCTGCANAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGEST: gi|10847263|gb|BF069975.1|BF069975
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGG
EST: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAG GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
genomic: AGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataat ... attcctgtagGAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGAAGATTCTTTGGTGGAGCTGCTGCAAAGCCTCGCGGACATGGATATAACATTCCAAGGGTTAAAGgtaaaataatttcattttggaattgttctttgttttgtttgatggtttaattaacggtgtttgtattttgattcctgtag
- - - - - - - - - AGCTGC
- - - - - - - - - - GCTGCT
- - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - CATGGA