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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataaccttaattattaattaatactaattattaagttaataatattgggggattttatgaagcgcatgtgaagttattaatggtaattaatgatgatgttggtgtgggaattggcag

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7693081|gb|AW761179.1|AW761179
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|20449163|gb|BQ253287.1|BQ253287
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAA
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAA
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|21677520|gb|BQ629871.1|BQ629871
EST:     GAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     GGATGAGTGGGTG-AGTTGAATCCACGGGGAGGAAGCAACACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAGCACTCTGATGG                         CTGATGGAGACTCGTCGCCTGTGCAGACAACCACTCAAGATGGGCATCATC
genomic: GGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataacctt ... gaattggcagCTGATGGAGACTCGTCGCCTGTGCAGAAAACCACTCAAAATGGGCATCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGGAAGCAACACTCTGATGGgtataaccttaattattaattaatactaattattaagttaataatattgggggattttatgaagcgcatgtgaagttattaatggtaattaatgatgatgttggtgtgggaattggcag

- - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA