1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacggatatgatgatttcagatttcacaaccattttggtgtgtctgaaaatattaatgtgatggtggggtttttaagtaaaaggtgtattgagtggtcatttgacacagtgttgaatgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTG
species | Glycine max |
transcript | GLYMA04G39470.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAAC AGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGEST: gi|21677520|gb|BQ629871.1|BQ629871
genomic: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatat ... atgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGG
EST: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAAC AGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGEST: gi|8286013|gb|BE023501.1|BE023501
genomic: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatat ... atgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGG
EST: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAAC AGACAGAAGGGA
genomic: AACACGCGCCATCACCGTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACgtacggatat ... atgattgcagAGACAGA-GGGA
ttttaagtaaaaggtgtattgagtggtcatttgacacagtgttgaatgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTG
atttgac putative branch site (score: 4)
agtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggatatgatgatttcagatttcacaaccattttggtgtgtctgaaaatattaatgtgatggtggggtttttaagtaaaaggtgtattgagtggtcatttgacacagtgttgaatgattgcagAGACAGAGGGAGAGCAGTTTTGACGCGGAGAGGCTTGCTTCGGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG