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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaagagatataactataaatatataacttcaatttcaatcttttatgcggaaattaaggttgtcgtgttttgcgtgagcttcaattaaattgattgacttggttcatttcatttgttattttgcag

Basic information

species Glycine max
transcript GLYMA04G39470.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39470.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g00280.t01 (Vitis vinifera), 5'ss of exon 3
GAGACTGACATCGGGAGGCACGTGAATCGGTTACGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaagagatataactataaatatataacttcaatttcaatcttttatgcggaaattaagg--ttgtcgtgttttgcgtgagcttc-aattaaattgattgacttggtt--catttcatttgttattttgcag---------------------------------------------------
|||||||| ||||| ||||| |||||||| || ||||||||||| || |||||  | ||| ||||||| |||   ||||||||||||    |   |||   | |   || |   |       |  | |  | | |  |||   ||||     |  |      |   ||      ||  |||||     |||| |    ||||| ||||  | ||  | |                                                    
GAGACTGATATCGGAAGGCATGTGAATCGATTGCGGAAGCATCCATCTAACGATGTGCGGAGATTGGTAAAGCATCTTGTCAGgtttgtagaattatacctcaaccgatttgggaacgtgtgtggacttgtctgtttggatgctaagaaaccgcaggaaagggaaggaaaagggaaaaaaatttggaaacttcgcgagcattttatttccttttccgaaatggaaaactgggaaaagaagaactgatgattctgcgggttgttcgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449163|gb|BQ253287.1|BQ253287
EST:     CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG                         GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
genomic: CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaag ... tattttgcagGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
EST: gi|20812089|gb|BQ296567.1|BQ296567
EST:     CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG                         GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
genomic: CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaag ... tattttgcagGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
EST: gi|6070892|gb|AW100279.1|AW100279
EST:     CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG                         GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAA
genomic: CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaag ... tattttgcagGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAA
EST: gi|10844098|gb|BF067435.1|BF067435
EST:     CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG                         GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGNGAGG
genomic: CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaag ... tattttgcagGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
EST: gi|8286013|gb|BE023501.1|BE023501
EST:     CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG                         GAAGTGGAAGGAAATTGTGGATGAGTGGGTG-AGTTGAATCCACGGGGAGG
genomic: CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaag ... tattttgcagGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
EST: gi|10847263|gb|BF069975.1|BF069975
EST:     CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAG                         GAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG
genomic: CGGAAGCATCCTTCAAACGACCTTCGGCGATTGGTGAAGTTGCTTGTCAGgttttggaag ... tattttgcagGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACGGGGAGG