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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgcggcgcgggatccccatacttgtgaggcagcagccaaacaatgaatctaagcatacggcggcaaacttggttgtcaagcgttatcacagtcgtagttctaccctgtgcggcctagcgtgtaagttacacgggcgcttcctgcagGTCACAATGACGAAGACCGCCGACTTGGTCGGCCGCACCGTGCGCGAGGTATCGTGGCAGGGCCGCTTCGGTCTCATCCCCGTGGCCATCCAGCGCGGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP05749
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|49470885|gb|BP098746.1|BP098746
EST:     CGACCGCATTCCACGACACCGGCGCCTCTCCCTACAAGAAACTGGTGCAG                         GTCACAATGACGAAGACCGCCGACTTGGTCGGCCGCACCGTGC
genomic: CGACCGCATTCCACGACACCGGCGCCTCTCCCTACAAGAAACTGGTGCAGgtgggtgcgg ... cttcctgcagGTCACAATGACGAAGACCGCCGACTTGGTCGGCCGCACCGTGC
EST: gi|161792905|gb|FC082159.1|FC082159
EST:     CGACCGCATTCCACGACACCGGTGCCTCTCCCTACAAGAAACTGGTGCAG                         GTCACAATGACGAAGACCGCCGACTTGGTCGGCCGCACCGTGCGCGAGGTA
genomic: CGACCGCATTCCACGACACCGGCGCCTCTCCCTACAAGAAACTGGTGCAGgtgggtgcgg ... cttcctgcagGTCACAATGACGAAGACCGCCGACTTGGTCGGCCGCACCGTGCGCGAGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtagttctaccctgtgcggcctagcgtgtaagttacacgggcgcttcctgcagGTCACAATGACGAAGACCGCCGACTTGGTCGGCCGCACCGTGCGCGAGGTATCGTGGCAGGGCCGCTTCGGTCTCATCCCCGTGGCCATCCAGCGCGGCA
                                           cgcttcct  CT-rich tract
                              taagtta  TA-rich tract